Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5218 246 3e-60 seq5403 150 2e-31 >seq5218 Length=3038582 Score = 246 bits (272), Expect = 3e-60 Identities = 943/1485 (64%), Gaps = 20/1485 (1%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || || ||||||| ||| | || |||| ||||| || || || ||||| || Sbjct 2802893 TTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCG 2802834 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || | ||| |||| |||||||| || || | || ||| | || Sbjct 2802833 GTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGGC 2802774 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | ||| ||||| | || || |||||||| ||||| ||||| | ||| || ||| Sbjct 2802773 TCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGCC 2802714 Query 47154 ATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 || | || | ||| || || ||||| |||||||| |||| | | | | Sbjct 2802713 ATTTT--AATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGGACCT 2802656 Query 47212 CTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 || ||| | |||| | |||||||||| ||||| | | | ||| || | || || | Sbjct 2802655 TTTGTGGAATTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCTTCA 2802596 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 |||| ||| | | | || || || | | | |||| | || || | || Sbjct 2802595 TGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCACTT 2802536 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 | || || ||||| ||||| | | |||| ||||| ||||||| || || | |||| Sbjct 2802535 GGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATT 2802476 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 | ||||| || | |||||||||||| |||||||| ||||| | || || || | | | Sbjct 2802475 CGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGT 2802416 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 |||| ||||||| ||||| || |||||| ||||||||||||| | Sbjct 2802415 TTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTGTCG 2802356 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 | || ||| | || || || |||||||| ||||| | |||| || | ||| | Sbjct 2802355 GCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAAG 2802296 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| ||| | |||| || || ||||| ||||| ||||||| || | | | || | Sbjct 2802295 TTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAA 2802236 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNN 47688 | |||||||| || | | ||||| || || || ||| | ||||| Sbjct 2802235 TGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATAACGCA 2802176 Query 47689 NNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTAT 47748 | | || |||| || ||||| || || ||||| || | ||| || || Sbjct 2802175 TAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAAT 2802116 Query 47749 TAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNN 47808 | || || || || || | ||| || |||||||||||| || ||||| || Sbjct 2802115 TGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTC 2802056 Query 47809 NNNNNNNNNNNNNNACAATTTCTCTTAAT-TTATTAAAATCAAACTTGTTATTTA---TA 47864 | || ||||| || || || ||| | | || | | | Sbjct 2802055 TGGCCACCGTCTTTGTGACCTC-CTTAAGCTTTTTGAAGTCATATGTTTTCTCTGGCGTC 2801997 Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| | || || || || ||||| | ||| || || || | ||| | || || Sbjct 2801996 ACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAG 2801937 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 || | | ||||| | || ||||||| ||||| || || |||| || || || || Sbjct 2801936 TACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTG 2801877 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 | ||| || ||||||||| | ||||| |||| | ||||| || | || || Sbjct 2801876 CTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGAC 2801817 Query 48045 TCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGCTTTATTATCA 48101 |||||||| | ||| | | | || |||| ||| || | || || Sbjct 2801816 TCAATGATGGCGAACCACAAGGACTGTGCTTTTA---CAGTTCGGTTTGCGCGTCCCTCC 2801760 Query 48102 TGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGA 48161 ||||||||||| ||||| ||| ||||| ||||| || |||||| || | ||||| Sbjct 2801759 TGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCCAGGG 2801700 Query 48162 CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 |||| | ||||| | | ||||| ||||||| | |||| |||| || | | Sbjct 2801699 CATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGA 2801640 Query 48222 TCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATT 48280 ||||||||||| || || ||| || ||||| | | || | ||||| |||||| |||| Sbjct 2801639 TCTGGTATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTATT 2801581 Query 48281 CCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCAT 48340 | | ||||| || ||||| || | | ||| | |||||| || |||| ||| || || | Sbjct 2801580 CTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAA 2801521 Query 48341 TACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCT 48400 | || || || || ||| || ||||| | ||||| || |||||| | ||||| Sbjct 2801520 GGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCT 2801461 Query 48401 TAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 | ||| || || | |||||| || | || |||||||| |||| Sbjct 2801460 CAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAAT 2801416 >seq5403 Length=2915140 Score = 150 bits (166), Expect = 2e-31 Identities = 531/814 (65%), Gaps = 14/814 (2%) Strand=Plus/Minus Query 18691 TTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATT 18749 ||||||||||| || || || || || | || || ||| ||||| |||| || ||||| Sbjct 122320 TTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGAT-CATCTCCATGAAATTGAAAGGATT 122262 Query 18750 TTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTT 18809 || || || ||||| || || | |||| ||||| | ||||| || |||| Sbjct 122261 CTTGGTGTTGTAGATTTTCCCGACGCCCAGCTCTACCAGTAGCCGGTCCGCAACGAATTC 122202 Query 18810 AATATATGTGTT-CATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTG 18868 || ||| ||| ||||| || || ||||| || || || || || || | || |||| Sbjct 122201 GATGTAT-TGTGACATCAAGTCGCAGTTCATGCCGATCAAATTCACGGGCAAGGCGTCTG 122143 Query 18869 TAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA--GATACAACTCTATCTTC 18926 | || || || ||||| || | || || || || || ||| | || | | Sbjct 122142 TGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATCTCGATGATGCGCTCCCGAC 122083 Query 18927 ATTAGGAGGGTATAGAAGATGTTTAAACATCAA-ACATGCAAAATCACAATGTAGTCCCT 18985 | || | | ||||| | ||||| | ||| ||||| || || || || || | Sbjct 122082 GT--GGCTTCTGGACGAGATGCTGGAACATTAGCACA-GCAAAGTCGCAGTGAAGGCCTT 122026 Query 18986 CGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttA 19045 |||| || |||| || || || || || | |||||||||||| |||| || || | Sbjct 122025 CGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGACCTCGCTTCTTCA 121966 Query 19046 ACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAA 19105 |||||| || || || || || ||||| || || ||||| || |||||||| | Sbjct 121965 GCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATTCCCTCTACGGCAGCAAAAGCGA 121906 Query 19106 CTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCC 19164 | | |||||| | | ||| | | | | || ||||| ||| |||||||| ||| Sbjct 121905 TGATGCGCTCTCCAAAGTTGGCA-GACTTTGAGGAGATCCAGGCCAGCGCCCAATCGGCC 121847 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTA 19224 || || || ||||| || || || | ||| || || ||| |||| | | | Sbjct 121846 TTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAACAGGTACTCGCGCTGGTGGGGA 121787 Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||| ||| || | || || | || ||||||||| || || || | ||||| || || Sbjct 121786 TCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCCGAGTGTACGTTTTCCATGGCG 121727 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || || || || |||||||| | || || || | ||| || || || || | || Sbjct 121726 ATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGAACCTCCTGACTGAAGCGCTCA 121667 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| ||| || || || |||||||| ||| ||||| || || | || || || Sbjct 121666 ACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAGAAGGCCAGCACGTGGGAGATG 121607 Query 19405 AAATGTTTTTCATCTGAGGTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 || || |||||| | |||| | | |||||| ||| ||| || || | || || Sbjct 121606 AAGTGGCGTTCATC-GTCCTTAAGGCGGTGCCAATCGGTAAGATCCTTGGAAAGGTCCAC 121548 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || || |||||||| ||||| || || || ||| Sbjct 121547 CTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTT 121514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562070155020000