Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1253 123 2e-22 seq5354 105 5e-17 seq1454 104 2e-16 seq5358 95.1 1e-13 >seq1253 Length=3799 Score = 123 bits (136), Expect = 2e-22 Identities = 155/210 (74%), Gaps = 12/210 (6%) Strand=Plus/Minus Query 361626 AAACATCGAGTGTTCCTGCACCTAAATCATATATGATAATATTCCCCCCGTTTTTATTTT 361685 ||||||| | || ||| ||||||||||||| | ||| ||| |||| || || Sbjct 3572 AAACATCAAAAGTACCTCCACCTAAATCATAAAC--TAAGATT-------TTTTCATCTT 3522 Query 361686 TCCAAGTTTTACTTCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTT 361745 | ||||| || || |||||| || | |||||| || || ||||| ||||| ||| Sbjct 3521 TGTCTTTTTTA--TCTAA-ACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATAATTC 3465 Query 361746 TAATAACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCAT 361805 | |||||| ||||| || ||||| |||||| || ||||||||||| ||||||| Sbjct 3464 TTTTAACATCAAGTCCGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCATCAT 3405 Query 361806 TAAAATATGCAGGAACAGTAATCACTGCTT 361835 |||| || |||||||||||||| ||||||| Sbjct 3404 TAAAGTAAGCAGGAACAGTAATAACTGCTT 3375 Score = 123 bits (136), Expect = 2e-22 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| || || || |||||||| | |||||||||||||| |||||||| Sbjct 3377 GCAGTTATTACTGTTCCTGCTTACTTTAATGATGCTCAACGTCAAGCTACCAAAGATGCC 3436 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| |||||| ||||| | ||||| |||||||||||||| ||| ||||| Sbjct 3437 GGTAAAATTGCCGGACTTGATGTTAAAAGAATTATTAATGAACCTACTGCAGCTTCACTT 3496 Query 550520 GCATATGGACTTGATAAA 550537 |||||||| | |||||| Sbjct 3497 GCATATGGTTTAGATAAA 3514 >seq5354 Length=5555046 Score = 105 bits (116), Expect = 5e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 |||||||| || || || || || || || || ||||| || || || || || || ||| Sbjct 1170052 GATGCAGTCATTACGGTGCCTGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGAT 1169993 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 || ||| || || ||| | ||||| |||||||||||||| || || ||||| || || Sbjct 1169992 GCCGGAGCCATCGCCGGATTAAATGTCCTTCGTATTATCAACGAGCCCACTGCCGCAGCT 1169933 Query 550517 CTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 || || |||||||| || || || | | ||| | ||||| ||||||||||| Sbjct 1169932 CTGGCCTATGGACTCGACAAGAATCTTAAGGGAGAGCGCAATGTGCTCATCTTTGA 1169877 >seq1454 Length=1090 Score = 104 bits (114), Expect = 2e-16 Identities = 248/376 (66%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 |||| || ||||| ||||||||| ||||| || ||||||| | || || |||| Sbjct 146 TTAACCCTGATGAAGCTGTTGCCCTAGGTGCAGCTATTCAAGGTGGAGTTATTACTGG-- 203 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 ||||| || || | || | | ||||||||||| | || | || Sbjct 204 ----TGATGTTAAGG------ATGTCGTTTTGCTTGATGTTACTCCATTGTCATTAGGCA 253 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | ||||| | || ||| | | ||||| | ||||||||||||||||| || || | Sbjct 254 TTGAAACCATGGGTGGTGTATTTACTAAGTTAATCGATAGAAATACTACAATCCCAACTT 313 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 ||| || | ||| || || | |||||||||||||||||| ||||| ||| Sbjct 314 CAAAGTCACAAACATTCTCAACTGCCGCTGATAATCAAACTGCTGTTGACATTCATGTTT 373 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 | |||| ||| | | | || ||| |||| ||| ||| ||| | ||| | Sbjct 374 TACAAGGTGAACGTCCAATGGCTGCTGATGATAAGTCACTAGGTCGTTTCCAATTAACTG 433 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 ||||||| |||| || | || || || |||||||||||||| || ||||| ||| | Sbjct 434 ATATTCCTGCTGCACCAAGAGGTGTTCCACAAATTGAAGTTACCTTTGATATTGATAAAA 493 Query 552568 ATGGAATTTTGAATGT 552583 | |||||| | ||||| Sbjct 494 ACGGAATTGTTAATGT 509 >seq5358 Length=3330258 Score = 95.1 bits (104), Expect = 1e-13 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||| |||||||| || || || ||||| || || || ||| || || || || || Sbjct 2926409 GTTAAAGATGCAGTGATTACGGTGCCAGCGTACTTCAACGACAGCCAGCGGCAGGCGACC 2926350 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||| || ||||| ||| | ||||| || || || |||||||| || || || Sbjct 2926349 AAGGATGCGGGCTCCATTGCAGGATTGAATGTCCTACGGATCATCAATGAGCCGACGGCA 2926290 Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTT 550570 ||||| || || |||||| | |||||| || | | || | ||||| ||||||||| Sbjct 2926289 GCTGCTCTGGCGTATGGATTGGATAAAAATCTTAAGGGGGAGCGCAATGTGCTCATCTTT 2926230 Query 550571 GA 550572 || Sbjct 2926229 GA 2926228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029005135195000