Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1218 84.2 2e-11 >seq1218 Length=8613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| | |||||| ||||| || || || ||||| || || || || || || | | Sbjct 2083 GTAAATGTGAGCATCTCCTAGAGTATGAACAAAATCACCGGGCTCAAGACCTACCTCTTT 2024 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 || || | || || | |||| || || ||||||||||| || || || || || Sbjct 2023 TGCAATTAAGTTAGTCAAAAGAGCATAACTAGCGATGTTAAACGGAACTCCAAGGAAAAT 1964 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30002 ||| || || ||| || | ||| || || | ||||||| | |||||||| ||| | Sbjct 1963 GTCGCCACTCCGCTGATACAACTGGCAACTCAGTTTTCCGTCGTTAACGTAAAATTGAAA 1904 Query 30003 CATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30062 ||| || |||||||| || ||||| || | ||||| || |||||||| | || Sbjct 1903 CATTACATGACACGGAGGGAGTGCCATACTTCCAATGTCTTCTGGATTCCAGGCACTTAC 1844 Query 30063 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 30096 || || || || ||||| || ||| | ||| Sbjct 1843 AATCATTCGTCTTGAATCTGGATTATTCTTAATG 1810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408590209851500