Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5215 107 2e-18 seq5213 96.9 3e-15 >seq5215 Length=2160492 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| || || | | |||| || Sbjct 1797527 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1797586 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || ||||| || || ||||| Sbjct 1797587 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1797646 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | || || || | ||||| || | |||| ||||| Sbjct 1797647 ATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTT 1797706 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| ||||| |||||||| Sbjct 1797707 CCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | | ||||| || || ||||| || || || ||||| || |||||||||| Sbjct 1797052 TCCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGA 1797111 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 || || | | |||| || | ||||| || || || ||||||||||| || || || || Sbjct 1797112 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797171 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||||| || || || || || || || || | || | ||||| || | || || Sbjct 1797172 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGAC 1797231 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || || || || || || |||||||| Sbjct 1797232 CTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||| |||| || || | | |||| || Sbjct 1797299 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1797358 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| || || || || ||||| || || || || Sbjct 1797359 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1797418 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | || || || ||||||| || || Sbjct 1797419 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTA 1797478 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || |||||||| Sbjct 1797479 CCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 >seq5213 Length=770604 Score = 96.9 bits (106), Expect = 3e-15 Identities = 177/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 13648 TATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGG 13707 || || |||||| ||| ||| |||| | | ||||||| ||||| || ||| |||| | Sbjct 538657 TACATCGAATTTACGTCGACAGCCTTGATAGTTCATGTAGCGTATCTTTCCAAAGATAGA 538598 Query 13708 TCGCTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACC 13767 ||| ||| |||| | || || |||| | || ||||||||||| || ||||||| Sbjct 538597 TCGTTCCTTCCATCCCATGTCATGGATTCCCCCGATGGACCACATGCACCCCACATAACC 538538 Query 13768 GTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATA-TATGGCGTTGATTAAAG 13826 ||||| || ||||| |||| |||||| || || || || || ||||||| | | || Sbjct 538537 ATTGGGGTCTCGTCCGTCCAGACTGTACTTATCATT-AAGTAGAATGGCGT--ACTCCAG 538481 Query 13827 CCACTG--TAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATA 13884 ||| ||| | ||| || | || ||||||||||| || || | || | Sbjct 538480 GGCCTGCTCAGGAGTCTCGCTCCACTCGAGGATCTTTTTAGCCCAGTACATGCGCAGGAA 538421 Query 13885 TCCGTGCATTTTGCC 13899 |||||||||||||| Sbjct 538420 GCCGTGCATTTTGCC 538406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251836963500