Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3194 89.7 9e-13 seq1106 89.7 9e-13 seq1093 87.8 3e-12 >seq3194 Length=20302 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 376 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 435 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 436 CCTGCCCCCGCAACCAGAA 454 >seq1106 Length=55705 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 55330 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 55271 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 55270 CCTGCCCCCGCAACCAGAA 55252 >seq1093 Length=35124 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 34915 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 34856 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 34855 CCTGCCCCCGCAACCA 34840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895704816060000