Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5403 237 3e-57 seq5218 145 1e-29 >seq5403 Length=2915140 Score = 237 bits (262), Expect = 3e-57 Identities = 556/828 (67%), Gaps = 21/828 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | || ||||||||||| |||||||| |||| |||||| |||| Sbjct 122339 CTGGTACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTC 122280 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954 |||||| ||| || || ||||| || | |||| | ||||| || | ||| Sbjct 122279 CATGAAATTGAAAGGATTCTTGGTGTTGTAGATTTTCCCG----ACGCCCAGCTCTACCA 122224 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 | || | ||||| ||| | |||||||||| |||||| | | | ||||||||| || | Sbjct 122223 GTAGCCGGTCCGCAACGAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCA 122164 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 ||||||||| || | |||||| ||||||| || || | ||| || || | | | Sbjct 122163 AATTCACGGGCAAGGCGTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGA 122104 Query 48075 TCTGCTTAACGCGGGACT-CTGA--GGGTTTGTTGCGCAGGTGCTTG-GCATAGAGCATG 48130 ||| | | ||| || | || || || | | || |||| | ||| |||| Sbjct 122103 TCTCGATGATGCG---CTCCCGACGTGGCTTCTGGACGAGATGCTGGAACAT-TAGCA-- 122050 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| | ||| | ||||||||||| | ||| ||| ||||||||||| ||| Sbjct 122049 CA-GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGA 121991 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||| | || | || || |||||||| || | ||||| || ||||||| Sbjct 121990 CCAGGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAG 121931 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || || || ||| ||| | |||||| || || ||| ||| Sbjct 121930 ATTCCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAG 121871 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||||| |||||||| || ||||| ||| | |||||||| || ||||| | Sbjct 121870 ATCCAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTG 121811 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || || | || || || | || || || || || || ||||||| Sbjct 121810 AACAGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATC 121751 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| || || || || ||||| ||||| || || || | ||||| ||| Sbjct 121750 TCCGAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACC 121691 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || || || ||| | ||| | ||||||||| || || || ||||| ||||||||| Sbjct 121690 TGAACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCA 121631 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 |||||||| || || || | ||| ||||| || | || | || || | | | Sbjct 121630 AAGAAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAG-GCGGTGCCAATC 121572 Query 48611 TGTACG-TCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 ||| | || ||| |||||||| || || || |||||||| || || Sbjct 121571 GGTAAGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGC 121524 >seq5218 Length=3038582 Score = 145 bits (160), Expect = 1e-29 Identities = 735/1158 (63%), Gaps = 44/1158 (4%) Strand=Plus/Minus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| ||||||| | ||||| || || ||||| || | || |||| |||| || Sbjct 2802551 TGATGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTA 2802492 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 |||||||||| | ||||| || |||| ||| || ||||| ||||||||||| ||| Sbjct 2802491 TAGGGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGA 2802432 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCTCTGCCCA 213082 ||||||| || ||| || ||||| || | |||| | | || || || ||| Sbjct 2802431 GCCACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATG-GACTCCTTCAGACCTTTCCA 2802373 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| ||| ||| ||| || | | ||||||||| |||||| || || Sbjct 2802372 GTCCCAA-----AGATCTGTCGGCGT--TTTA--TCCCACATGTCGTACTGCAGAATTCC 2802322 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 || || || || || || | |||| |||| ||| | | | |||||| ||||| Sbjct 2802321 CTTACTGACCGGACTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCA 2802262 Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262 || | |||||| | |||| ||||||||||| |||| ||| | |||| Sbjct 2802261 ACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGC 2802202 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAA----CACATCAGCCAGCCCCTGGA 213318 ||| | | |||| || | || | ||| | | |||||||| ||||| | Sbjct 2802201 CTCCTCGCTTTCGTAGGG----ATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAA 2802146 Query 213319 CCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAA 213378 | |||||||| || || | || || | || ||||| | |||| || ||||||| Sbjct 2802145 CGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAA 2802086 Query 213379 AGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT---TTGGTGACATGGGCCA 213435 |||| || || ||||| |||||||| | ||||||| || ||||| | | Sbjct 2802085 AGTTTATATCTATTATCTTATTGAGGTTTC---TGGCCACCGTCTTTGTGACCTCCTTAA 2802029 Query 213436 GGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 | | | ||| | | || | | | | | ||||||| || ||||| | Sbjct 2802028 GCTTTT--TGAAGTCATATGTTTTCTCTGGCGT-CACAAACATGTTGAGAGCGATCGATG 2801972 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||||| || | ||| | | | |||||| | || || |||||||| | Sbjct 2801971 CCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAGTACTCGACAATTTCCGTGCACAGAT 2801912 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 | |||||| |||||||||| |||||| ||||| |||| |||| | |||||| Sbjct 2801911 TACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGA 2801852 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 |||||||||| || || ||||| | || ||| | | || | ||| | | || Sbjct 2801851 AGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATGGCGAACCACAAGGACT 2801792 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGC-GTAGCCTCGTACTGTTCGTAGAGCTCG 213734 || || || || | | ||| | || ||||| | | || |||| Sbjct 2801791 GTGCTTTTACAGTTCGGTTTGCGCGTCCCTCCTGT----TCGTATTTCACATATAGCTTT 2801736 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 | || || | |||||| || | ||||| || || |||||| | || | Sbjct 2801735 TCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGAC 2801676 Query 213795 CAGTCCCCGTCAT----CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 |||||| |||| ||| |||| | |||||| || || || | |||||| || Sbjct 2801675 CAGTCC---TCATTGGCCTCC-ACTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATA 2801620 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 ||||| || | || | ||| ||| |||| || || || || ||||| || Sbjct 2801619 GAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTATTCTTCTTAAGGTCCAGAAACTC 2801560 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CC 213967 ||| | |||| ||||| ||||| | || ||||||||||| ||||||| |||| || Sbjct 2801559 AAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCACC 2801500 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| ||||| | ||||| |||| |||| | ||| | || ||||| || || Sbjct 2801499 ACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCATAGGAACCAGACCATT 2801440 Query 214028 GGACTGTCCGTTGGTTCC 214045 ||| ||||||||||| Sbjct 2801439 GGAAGTGCCGTTGGTTCC 2801422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931468757120000