Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5403 167 4e-36 seq5218 134 3e-26 >seq5403 Length=2915140 Score = 167 bits (184), Expect = 4e-36 Identities = 476/732 (65%), Gaps = 13/732 (2%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| |||| |||||||| || || ||||| || || |||||||||||| ||| | | Sbjct 121615 ACGTGCTGGCCTTCTTTGCTGCTTCCGATGGAATTGTAAACGAGAATCTGGTTGAGCGCT 121674 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| ||| || ||| | |||||| ||||| || || ||||| || ||||| | Sbjct 121675 TCAGTCAGGAGGTTCAGGTCACGGAGGCTCGCTGTTTTTATGGCTTCCAAATCGCCATGG 121734 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 |||| || ||||| ||| |||| || | || || || ||||||| ||| | Sbjct 121735 AAAACGTACACTCGGAGATGTA---CAGTGTACTCATCGACACTTACATTAGAGATCCCC 121791 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | || | || ||||| |||||| || || || | ||| | ||||| Sbjct 121792 ACCAGCGCGAGTACCTGTTCAATGCCATTGAAACGATGCCGGCGGTGAAGCGCAAGGCCG 121851 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| || |||||| | || || | ||||| ||||| | | || | Sbjct 121852 ATTGGGCGCTGGCCTGGATCTCCTCAAAGTCTGCCAACTTTGGAGAGCGCATCATCGCTT 121911 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 ||||||| || ||||| ||||| ||||||||| || || ||||||||||||| ||| Sbjct 121912 TTGCTGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTGAAGA 121971 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || ||||| || ||| ||| ||||||||||| ||| ||||||||| || | Sbjct 121972 AGCGAGGTCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGACGAAGGCC 122031 Query 26012 TCCACAGAGATTTTGCCTGCCTGCT-CTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 | ||| | || |||| ||| |||| | | || || | |||| || || || Sbjct 122032 TTCACTGCGACTTTG-CTG--TGCTAATGTTCCAGCATCTCG-TCCAGAAGCCACGTCGG 122087 Query 26071 GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 ||| | || | |||||| || |||||||| || || ||||||| | Sbjct 122088 GAGCGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAACAGGAGTTCCTCACAGAC 122147 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCATGAGCCAATACATTGAGTA 26189 | ||||||||| | ||| | ||| |||||||| || | Sbjct 122148 GCCTTGCCCGTGAATTTGATCGGCATGAACTGC-GACTTGATGTCACAATACATCGAATT 122206 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 || || |||| || ||| ||||||| ||| | | |||||| || || || Sbjct 122207 CGTTGCGGACCGGCTACTGGTAGAGCTGGGCGTCGGGAAAATCTACAACACCAAGAATCC 122266 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 ||| | || ||||| | || ||| |||| ||||||||||||||||||||||||| ||| Sbjct 122267 TTTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGGT 122326 Query 26310 CGGCGACTATCA 26321 || || || || Sbjct 122327 GGGAGAGTACCA 122338 >seq5218 Length=3038582 Score = 134 bits (148), Expect = 3e-26 Identities = 573/893 (64%), Gaps = 27/893 (3%) Strand=Plus/Minus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 || || || || || || ||||| || ||||| |||| || | || || ||| || Sbjct 2801927 ATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGG 2801868 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| ||||||||| ||||||| | ||| ||||||||||| || | | | | || Sbjct 2801867 TTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATG 2801808 Query 221879 TTGTCCCAGA-GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 | ||| | | || || | | || || | || | ||||| || ||| || Sbjct 2801807 GCGAACCACAAGGACTGTG-CTTTTACAGTTCGGTTTGCGCGTCCCTC---CTGTTCGTA 2801752 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 ||| ||| | ||||||| || || || | || | || || || || || Sbjct 2801751 TTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTG 2801692 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 |||||| | || ||||| || ||| | | || | | ||||||||| || || || Sbjct 2801691 GGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTAT 2801632 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 |||||| || | || | ||| | || || ||||| ||| ||| | || ||| | || Sbjct 2801631 CCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTATTCTTCTTAAG 2801572 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 |||| ||||||||||| || | ||||| ||||| ||||| | ||| | || || || Sbjct 2801571 GTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGG 2801512 Query 222178 TCGCTTGTTGCCACCCTGATCCAC-CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCG 222236 |||||| |||||||||||||| ||| | ||| ||| |||| | || | | Sbjct 2801511 CCGCTTGCCACCACCCTGATCCACATATCGT-GCCACGTTGTTAAAGACTCTCAGCATAG 2801453 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 | ||||| || ||||| |||||||| || |||| | | ||| || | | Sbjct 2801452 GAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTTTGCAC---GAA 2801396 Query 222297 TAC--TGG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| ||| || | || |||||||| || || |||||||||||||| || | Sbjct 2801395 TACAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATGGCGCATTGCTCAA 2801336 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | | | ||| ||||| || ||||| | | | |||| |||||||||||||| | Sbjct 2801335 CTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGAAAACAAGACGATA 2801276 Query 222414 TCTG----AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAG 222469 ||| ||||| |||| | ||| ||| ||||| || ||||| || || || Sbjct 2801275 GCTGGGGACGATTT-GTGGCA---GCGGCAAATAGCGTTGGCGAAGCGTGCGTGAAATAA 2801220 Query 222470 CCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGC 222529 | | || | || | ||||||||| ||| | |||||| || || || || Sbjct 2801219 CGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCATGGATTCCG 2801160 Query 222530 ATGGCGCATCTCATGTACATGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAG 222586 || || | ||| ||||| |||||| | || | | ||| || | | Sbjct 2801159 ATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCATT---GATTTTA 2801103 Query 222587 AGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 || |||||||| |||||||||||||| |||||||||||| ||||||| Sbjct 2801102 AGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGTC 2801050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928780941920000