Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq1017 111 9e-20 seq1218 86.0 4e-12 >seq1017 Length=11781 Score = 111 bits (122), Expect = 9e-20 Identities = 206/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 22743 AATTTATCCGGAACAATAACACCGATTGACATAGATTGAATTCTGCTCTTTTCATCTACG 22802 |||||||| || |||| ||||| | ||| | | | | || | | ||||| || || Sbjct 7543 AATTTATCTGGCACAACCACACCAAGTGAAAGGGTGTTTACTCGGATTTTTTCGTCGGCG 7484 Query 22803 TTAATTCGTTTTGTATCTAACATGC---GGATAATGTCCATATGGAAGATATTTAAGTAA 22859 || ||| |||| || || || | | || ||||| |||||| | | | | ||| Sbjct 7483 TT--TTCCTTTT-TAACTCCCAAGAATTGAATGATGTCAGGATGGAAAACACTAAGATAA 7427 Query 22860 GTTGCTCCTGCACCTTTTCGCTGTCCTAATTGGTTTGCGTAAGAGAATGCATCTTCTAAT 22919 | || ||||| |||| || |||| |||||| | || | ||| |||||||| | Sbjct 7426 ACAACCCCAGCACCGTTTCTTTGGCCTAGTTGGTTGGAATAGGTGAAACTATCTTCTAGT 7367 Query 22920 AACTTCATTACTGGAACAATACCGCTACTTGCTCCCTCGATTTCTTTAATCGGGTCTGAA 22979 |||||||||||||||| || ||| || |||||| | || | |||||| || || | Sbjct 7366 AACTTCATTACTGGAAGAACACCACTGGCTGCTCCTTGAATGTGTTTAATGGGATCACCA 7307 Query 22980 GTAGCTCTTATTTTAGATAAGTTTAA-TGCTACTCCACCGCCAATTTTCGATAACTG 23035 | |||||||| ||||| ||| |||| | | ||||| || |||||||| ||||| || Sbjct 7306 GCAGCTCTTAGGTTAGA-AAGATTAATTCCAACTCCTCCACCAATTTTGGATAATTG 7251 >seq1218 Length=8613 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/342 (66%), Gaps = 5/342 (1%) Strand=Plus/Minus Query 78345 TGTTCCTGTACTTGCGGTATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATG 78404 ||||||| ||| || |||||||| ||||||| ||||| || || | || |||| Sbjct 2112 TGTTCCTTTACCTGTTCAATATGATTACTGTAAATGTGAGCATCTCCTAGAGTATGAACA 2053 Query 78405 AAGTCTCCTACTTCCAGTCCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAA 78464 || || || || || || | | ||||| | | || | | || || | Sbjct 2052 AAATCACCGGGCTCAAGACCTACCTCTTTTGCAATTAAGTTAGTCAAAAGAGCATAACTA 1993 Query 78465 GCAATGTTAAATGGAATTCCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTT 78524 || |||||||| |||| ||| | ||| | ||| || || || || ||||| |||||||| Sbjct 1992 GCGATGTTAAACGGAACTCCAAGGAAAATGTCGCCACTCCGCTGATACAACTGGCAACTC 1933 Query 78525 AGCTTTCCATCAACTGATACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATA 78584 || ||||| || | | |||||||| || || | ||||| || || ||||||||| Sbjct 1932 AGTTTTCCGTCG--TTA-ACGTAAAATTGAAACATTACATGACACGGAGGGAGTGCCATA 1876 Query 78585 TCATCTAA-GTCAGCAGGATTCCAAGCAGACACAATATGTCTGCGTCCGTAAGGGTCTTT 78643 | || || ||| | |||||||| ||| ||||| || | | | || | || Sbjct 1875 -CTTCCAATGTCTTCTGGATTCCAGGCACTTACAATCATTCGTCTTGAATCTGGATTATT 1817 Query 78644 CATAATAGATTCTATTACATTAGCTATTTGGTCAATCGTTTC 78685 | |||| | ||| || ||||| ||||||||||| || || Sbjct 1816 CTTAATGGTTTCAATCACATTTTTAATTTGGTCAATGGTATC 1775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300139879900000