Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1335 93.3 4e-14 seq3213 89.7 5e-13 seq1178 82.4 8e-11 >seq1335 Length=17619 Score = 93.3 bits (102), Expect = 4e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 28885 ATTAGCTCAGCGGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCAATCCCGTCA 28944 ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| Sbjct 7206 ATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGCGGTTCGATCCCGTCA 7265 Query 28945 T 28945 | Sbjct 7266 T 7266 >seq3213 Length=8410 Score = 89.7 bits (98), Expect = 5e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCCAGC 17113 |||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 1944 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 1886 >seq1178 Length=45355 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 32024 TGCGGACCAGCTGGAGCAGGTCATTTTGTAAAGATGGTTCATAATGGAATCGAATACGGA 32083 ||||| || || ||| |||| |||||||| || ||||||||||| || || |||||||| Sbjct 30060 TGCGGCCCTGCCGGATCAGGCCATTTTGTTAAAATGGTTCATAACGGTATTGAATACGGC 30119 Query 32084 ATTATGCAAGCATACGCCGAAGGATTTAAC 32113 || ||||| || | |||||||| ||| || Sbjct 30120 ATGATGCAGGCCTTTGCCGAAGGCTTTGAC 30149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516444492000000