Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1253 154 1e-31 seq5059 143 2e-28 seq1454 127 1e-23 seq5218 114 8e-20 seq5354 107 1e-17 >seq1253 Length=3799 Score = 154 bits (170), Expect = 1e-31 Identities = 147/187 (79%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||| || || ||||||||| ||||||||||||| || |||||||| Sbjct 3377 GCAGTTATTACTGTTCCTGCTTACTTTAATGATGCTCAACGTCAAGCTACCAAAGATGCC 3436 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||| || ||| ||||| | | |||||||||||||| || ||||| ||||| Sbjct 3437 GGTAAAATTGCCGGACTTGATGTTAAAAGAATTATTAATGAACCTACTGCAGCTTCACTT 3496 Query 474857 GCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GT 474913 || |||||| | ||||| || |||||||| | ||| | ||| | | ||||| || Sbjct 3497 GCATATGGTTTAGATAAAAA---AGACAAAGATGAAAAAATCTTAGTTTATGATTTAGGT 3553 Query 474914 GGAGGTA 474920 ||||||| Sbjct 3554 GGAGGTA 3560 Score = 123 bits (136), Expect = 2e-22 Identities = 157/213 (74%), Gaps = 16/213 (8%) Strand=Plus/Minus Query 290747 GAAATATCTAATGTTCCTGCACCAAAATCGTATATAATAACATTACCTCCATTTTTAT-- 290804 |||| ||| || || ||| |||| ||||| ||| | ||| ||| |||| || Sbjct 3573 GAAACATCAAAAGTACCTCCACCTAAATC--ATAAACTAAGATT-------TTTTCATCT 3523 Query 290805 TTGTCCAAGTTTTGCTTCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAA 290864 ||||| |||| || || |||||||| | ||||||||| || |||||||| |||| Sbjct 3522 TTGTC----TTTTTTATCTAA-ACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATAA 3468 Query 290865 TTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCAT 290924 ||||| |||||||| || |||||||| | | |||| || || || ||||| |||| Sbjct 3467 TTCTTTTAACATCAAGTCCGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCAT 3408 Query 290925 CATTAAAATAAGCAGGGACTGTAATAACAGCTT 290957 ||||||| |||||||| || |||||||| |||| Sbjct 3407 CATTAAAGTAAGCAGGAACAGTAATAACTGCTT 3375 >seq5059 Length=3196756 Score = 143 bits (158), Expect = 2e-28 Identities = 367/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 737518 TTGGTATTGATTTGGGCACCACCTACTCCTGCGTGGGAGTGTTCCAGCATGGCAAGGTTG 737459 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| || || |||||| | || |||||||| |||||| | || || || | Sbjct 737458 AGATCATTGCCAACGATCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCACCGACA 737399 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || |||||||| || | || | || || || | || | Sbjct 737398 CCGAGCGTCTGATCGGCGATGCTGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 737339 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | | ||||| || || || || ||| | |||| || || || | Sbjct 737338 TCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTTCGACGATTCTGCTGTGCAGTCCGACA 737279 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-CA-AT 474630 || || ||||| || |||| | | |||| || || || | || || | || | Sbjct 737278 TGAAGCACTGGCCCTTCGAGGTTGTCAGCGTTGACGGCAAGCCCAAGATCGAGGTCACCT 737219 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 737218 ACAAGGATGAG-AAGAAGACCTTCTTC-CCTGAGGAGATCTCCTCGATGGTCCTCACCAA 737161 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | || | ||| ||||| || || | || || || ||| Sbjct 737160 GATGAAGGAGACCGCCGAG-GCCTA-CCTGGGCAAGACTGTGACCAACGCCGTCATCACT 737103 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || || ||||| ||||| || || || || || || | ||||| Sbjct 737102 GTGCCAGCTTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCCGGTACCATTGCC 737043 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | |||||| | ||||| || || || || || || || || |||| || ||||| Sbjct 737042 GGATTGAATGTTCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATTGCCTACGGTCTG 736983 Query 474869 GATAAGAA 474876 || ||||| Sbjct 736982 GACAAGAA 736975 >seq1454 Length=1090 Score = 127 bits (140), Expect = 1e-23 Identities = 207/298 (69%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 475884 TTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTA 475943 |||| || |||||| | |||||||| ||||||| | || || | | ||||| | | Sbjct 227 TTGATGTTACTCCATTGTCATTAGGCATTGAAACCATGGGTGGTGTATTTACTAAGTTAA 286 Query 475944 TTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATA 476003 | || ||||||||| | |||||| ||| ||| || ||| || ||| |||||| Sbjct 287 TCGATAGAAATACTACAATCCCAACTTCAAAGTCACAAACATTCTCAACTGCCGCTGATA 346 Query 476004 ATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATA 476063 ||||||| |||| ||| || | || |||||||| | | | || ||| ||| Sbjct 347 ATCAAACTGCTGTTGACATTCATGTTTTACAAGGTGAACGTCCAATGGCTGCTGATGATA 406 Query 476064 ACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAA 476123 | ||| || ||| | | | ||||||| |||| || ||||| ||||| |||| Sbjct 407 AGTCACTAGGTCGTTTCCAATTAACTGATATTCCTGCTGCACCAAGAGGTGTTCCACAAA 466 Query 476124 TTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||||| |||||||||||| ||| || ||| |||||||| | ||| ||||| Sbjct 467 TTGAAGTTACCTTTGATATTGATAAAAACGGAATTGTTAATGTTTCCGCTAAGGATAA 524 >seq5218 Length=3038582 Score = 114 bits (126), Expect = 8e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 2718319 TTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 2718378 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| || ||||| Sbjct 2718379 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCC 2718438 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 2718439 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 2718494 >seq5354 Length=5555046 Score = 107 bits (118), Expect = 1e-17 Identities = 254/381 (67%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 |||||||||||||| || || |||||||| ||| | || ||||||||| | || || | | Sbjct 1169380 AATCCTGATGAAGCGGTGGCCTATGGAGCGGCTATACAGGCAGCTATTCTTTCCGG-CGA 1169322 Query 475853 TCAGACGAG-AAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 ||| || | |||| || | |||| || || || |||| || ||| | || | Sbjct 1169321 CGAGAGCAGCCAGATAAAGGATGTCTTACTGGTGGATGTGGCTCCGCTATCACTGGGCAT 1169262 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 || || | ||| || | ||||| || || || || | || | | || || ||||| Sbjct 1169261 CGAGACTGCTGGTGGAGTGATGACCAAGCTAATCGAGCGCAACAGCCGCATTCCTTGCAA 1169202 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | |||| ||| ||| | || || | ||||| || | | || || || || | || Sbjct 1169201 ACAATCCAAAACATTCACAACCTACGCCGATAACCAGCCTGCGGTGACTATACAGGTTTT 1169142 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 || || || | | ||||| || || ||| || || || || || || || Sbjct 1169141 CGAGGGCGAGCGTGCTCTGACTAAGGACAACAACGTGCTGGGCACATTCAACCTGACCGG 1169082 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || ||||| |||||||| || || ||||||| || || || || | || || || Sbjct 1169081 CATCCCACCTGCACCCAGAGGCGTGCCAAAAATTGACGTCACCTTCGACTTGGACGCCAA 1169022 Query 476152 TGGTATTCTTAATGTTACTGC 476172 |||||| || |||||||| || Sbjct 1169021 TGGTATCCTCAATGTTACCGC 1169001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267943278314000