Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq1205 127 5e-25 seq3326 114 3e-21 >seq1205 Length=1301 Score = 127 bits (140), Expect = 5e-25 Identities = 130/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 4452 CAGTTCCTGGAAACGCGGCAGTTTC-AGGTGGTGGATCTGGCGCGGATCTGGGGCGTGCC 4510 ||||| ||||||| || || | | ||||| ||||| | ||||| ||||| || || Sbjct 239 CAGTTGGTGGAAACACG-CACTGCCCAGGTGCTGGATATTGCGCGCGCATGGGGTGTTCC 181 Query 4511 GCCGCACTTGATCTTCGAGCTGTCGAAAGCGACGTTTTCCAACATCGAGCAGCAAAGCCT 4570 |||||| |||| ||||||||||| || || ||||| || ||||||||||| || Sbjct 180 GCCGCATCTGATTTTCGAGCTGTCCAAGGCAACGTTCGGGAATATCGAGCAGCAGTCTCT 121 Query 4571 TGAATTTGTGACCTATCACCTGGGCCCGCATTTCGCCCGGGTGGCGG 4617 |||||||||| ||||||||| |||||||||||||| || ||||||| Sbjct 120 GGAATTTGTGATCTATCACCTCGGCCCGCATTTCGCACGCGTGGCGG 74 Score = 84.2 bits (92), Expect = 6e-12 Identities = 167/244 (68%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 3969 GACCTGCTTTTGGCGGGGAACTTCTACGCCTATGTCTCGCGCAA--CCAGCGTGGCGATC 4026 || ||||| |||| || || |||||||| ||||||||||| | || | || | | Sbjct 725 GATCTGCTGATGGCCGGAAATTTCTACGCGTATGTCTCGCGGGATGCCTTCATG--CAGC 668 Query 4027 CGGTGGCGCTGACCCGGCTGAAACCG---GGCACGGTGCTGGTGGCGGAATATTTCGATC 4083 | || || || || ||||| | ||| |||||| ||| | | | ||| ||||||| Sbjct 667 CTGTCGCCCTTACGCGGCTTGATCCGTTTGGCACGCTGCCGTT---GCAATCATTCGATC 611 Query 4084 GAGCCGAAGGGCAGATCCTGTTTTACGACGCCACGCTGCCGGACGGTTCGCGCGAGCGGT 4143 ||| || |||| | ||||||| || ||||| ||||| || || ||| || ||||| Sbjct 610 CAGCAACTGGCCAGAGCATGTTTTATGATGCCACCCTGCCTGATGGCTCGTCCGGGCGGT 551 Query 4144 TCGCCGGGCGGGATGTCTGGCATGTCGCCGGTCTGTCTCGGGATGGGCTGATCGGGTTGA 4203 | || | || ||| ||||||| || ||| || ||| |||| ||| || ||| Sbjct 550 TTGCAGCCCGTGATATCTGGCACGTTAGCGGCATGAGCCGGAATGGCCTGCAAGGCCTGA 491 Query 4204 GCCC 4207 |||| Sbjct 490 GCCC 487 >seq3326 Length=14546 Score = 114 bits (126), Expect = 3e-21 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 4452 CAGTTCCTGGAAACGCGGCAGTTTC-AGGTGGTGGATCTGGCGCGGATCTGGGGCGTGCC 4510 ||||| |||||||||| || | | ||||| ||||| | ||||| |||||||| || Sbjct 8452 CAGTTGGTGGAAACGCG-CACTGCCCAGGTGCTGGATATTGCGCGTGCATGGGGCGTTCC 8510 Query 4511 GCCGCACTTGATCTTCGAGCTGTCGAAAGCGACGTTTTCCAACATCGAGCAGCAAAGCCT 4570 |||||| |||| ||||| ||||| || || || || || ||||||||||| || Sbjct 8511 GCCGCATCTGATTTTCGAACTGTCCAAGGCCACATTCGGGAATATCGAGCAGCAGTCTCT 8570 Query 4571 TGAATTTGTGACCTATCACCTGGGCCCGCATTTCGCCCGGGTGGC 4615 ||||| |||| ||||||||| ||||||||||| || || ||||| Sbjct 8571 GGAATTCGTGATCTATCACCTTGGCCCGCATTTTGCACGCGTGGC 8615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129434745741000