Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3593 136 5e-27 >seq3593 Length=14824 Score = 136 bits (150), Expect = 5e-27 Identities = 341/518 (66%), Gaps = 0/518 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| || || | || || || || || ||||||||||| ||||| || ||||| Sbjct 1097 ACACCAATTGGCCCCATACCCGGTCCACCGCCACCATGTGGAATGCAGAAAGTTTTATGC 1156 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || | || | ||||| |||| ||||| || ||| || || ||||| ||| Sbjct 1157 AGGTTAAAGTGGCTAACATCCCCACCGTAGTCTGCCGGGCGTGCAAGCCCAACCTGAGCA 1216 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||||||||| ||||| || || | | ||| || Sbjct 1217 TTCATGTTGGCGCCATCCACATATACCTGCCCACCGGCTGAGTGCACCAGATCACAGATT 1276 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | |||||| |||||| || |||||||| || ||||| |||||||| | | Sbjct 1277 TCACGCATGTTTTCTTCAAACACGCCATGAGTGGAAGGATAAGTAATCATCACTGCGGCC 1336 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATCA 138482 || ||| | || | || ||||| | | |||| | || |||||||| | Sbjct 1337 AGATCATTCGCATGCGCTTTTATTTTCTCATGCATGTCTTCCAGATCAATGTTGCCGCCT 1396 Query 138483 TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTT 138542 |||||||||| || | ||||| ||||| || ||||| ||| ||| || || || Sbjct 1397 GCATCACACTTTACCACCACAACCTTCATGCCCGCCATTTGGGCAGAAGCTGGGTTGGTA 1456 Query 138543 CCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCTTGATGA 138602 || || || || | || || | ||| || | | | | || || || |||||| Sbjct 1457 CCGTGCGCAGAAGCCGGAATTAAACAAACTGTCCGATGCCCTTCCCCACGCCCCTGATGA 1516 Query 138603 TATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTGTAAT 138662 || || | || | | || |||||||| || ||||| | || | |||||||| || Sbjct 1517 TACGCACGAATAACAAGCAAACCTGCATATTCCCCCTGCGCGCCAGAATTAGGTTGGAAG 1576 Query 138663 GATATAGAATCAAAACCTGTGATATCACATAACCATTT 138700 || | || |||| |||| | ||| |||| | ||| || Sbjct 1577 GAAACAGCATCATAACCGCTAATAGCACACAGCCACTT 1614 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 139851 GCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATT 139910 || ||| ||| || ||||| ||||| ||||||||||||| ||||| | ||| || || Sbjct 2787 GCCAACGCCATGGCTTCTGCCGCTGCTGTTGCTTCATCTAGCAGAGAAGAGTTGGCGATA 2846 Query 139911 GGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCC 139970 || ||||| || ||||| || | |||||| | || || | ||||||| | || Sbjct 2847 TCCAACCCTGTCAGCTCTGTAATCATGGTTTGGAAGTTCAACAGGGCTTCCAGACGCCCT 2906 Query 139971 TGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACG 140030 || || || | ||||| || ||||||| |||||||||| ||||| || |||| Sbjct 2907 TGGCTGATTTCTGGCTGATACGGCGTGTAAGCTGTGTACCAAGCCGGATTTTCCAGAATA 2966 Query 140031 TTTCGCTGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAAG 140083 || ||||| || || | ||| | || || || || ||||| || || || Sbjct 2967 TTCCGCTGGATAACAGCGGGCAGCACCGTACCGTAATACCCTTGCCCGATCAG 3019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578958593860000