Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5218 187 3e-42 seq947 113 5e-20 seq5413 82.4 9e-11 >seq5218 Length=3038582 Score = 187 bits (206), Expect = 3e-42 Identities = 1104/1748 (63%), Gaps = 40/1748 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || |||||||| ||||| || |||||||| ||| ||| | Sbjct 2801131 CCCCAGCACATGCTTATGCGCGTGGCAATCGGAATCCATGGAGAAGACATCGATGCTGCC 2801190 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 ||||||| ||| || | | || | || |||| ||||| | ||||| || || Sbjct 2801191 GTGGAGACGTACAACTTGCTTTCGGAGCGTTATTTCACGCACGCTTCGCCAACGCTATTT 2801250 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 |||| ||| | || ||| | || ||| || || | ||| | ||| Sbjct 2801251 GCCGCTGCCACAAATCGTCCCCAGCTATCGTCTTGTTTTCTCCTGACCATGACTTCCGAC 2801310 Query 75392 TCAATCAACGGTATCTATGGAACTC--TTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || || | ||||||| || || || | | || || ||||| |||| || | Sbjct 2801311 TCGATTGAGGGTATCTTC--AAGTCAGTTGAGCAATGCGCCATGATCTCCAAGTCTGCAG 2801368 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | |||||||| | | ||||| | | | || || || ||| | || || | Sbjct 2801369 GTGGTATTGGTCTTAATGTCCATTGTATTCGTGCAAAGGGTACTTCCATTTGCGGAACCA 2801428 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || ||||| | |||| ||||| | || |||||| | || || |||| Sbjct 2801429 ACGGCACTTCCAATGGTCTGGTTCCTATGCTGAGAGTCTTTAACAACGTGGCACGATATG 2801488 Query 75570 TAAATCAAGCGGGGCGTCGCAAGGGGTC------CATCGCGGTCTACTTGGAACCATGGC 75623 | |||| ||| || ||||| || | | | || | || | || || |||| Sbjct 2801489 TGGATCA---GGGTGGTGGCAAGCGGCCGGGAGCCTTTGCCATTTATCTAGAGCCCTGGC 2801545 Query 75624 ATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || | ||| | | ||||| || || ||| || | | || | |||||| ||| Sbjct 2801546 ATTCGGATGTTTTTGAGTTTCTGGACCTTAAGAAGAATACT-GGCAAGGAAGAGCATCGA 2801604 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | ||| | || | |||||||||| ||||| || |||||||| || || |||| Sbjct 2801605 GCCCGTGATTTGTTCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGGCC 2801664 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 || | ||||| ||||||||||| |||| || || || || | | ||| Sbjct 2801665 AATGAGGACTGGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGGGGC 2801724 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTA 75862 || ||||||||| || || || || ||| ||||||| | || || |||||| Sbjct 2801725 GATGAGTTTGAAAAGCTATATGTGAAATACGAACAGGAGGGACGCGCAAACCGAACTGTA 2801784 Query 75863 CCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 ||| | | || ||| || || | | || || ||||||||| | || || Sbjct 2801785 AAAGCA-CAGTCCTTGTGGTTCGCCATCATTGAGTCGCAAGTGGAGACTGGCAATCCTTA 2801843 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 ||||| | |||||| || || ||| ||||| |||||| |||| |||| || || || Sbjct 2801844 CATGCTCTTCAAGGACGCGTGCAACCGAAAGAGCAACCAACAGAACGTGGGCACCATTAA 2801903 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 || ||||| |||||||||||| | |||||| | || |||| || ||||| Sbjct 2801904 ATGCAGTAATCTGTGCACGGAAATTGTCGAGTACTCTTCGCCCGACGAGATTGCAGTTTG 2801963 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 |||||||||||| ||||| || | || ||| | ||||| || | ||| | Sbjct 2801964 CAATTTGGCATCGATCGCTCTCAACATGTTTGTGACGCCAGAGA---AAACATATGACTT 2802020 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 |||| ||| | || ||||||||| || ||| ||| || || | || || | Sbjct 2802021 CAAAAAGCTTAAGGAGGTCACAAAGACGGTGGCCAGAAACCTCAATAAGATAATAGATAT 2802080 Query 76162 AAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221 ||| ||||| || | | || ||||| ||| | | || | |||||||| | Sbjct 2802081 AAACTTTTACCCACTGCCGGAGGCCAAGAAGTCCAATTTAAGGCATCGTCCTATTGGCAT 2802140 Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTGATTCAGATG 76280 || ||||| ||||| || || | | ||| || || || || | | || || | Sbjct 2802141 CGGCGTTCAGGGTCTGGCTGACGCGCTGATTCTTATG-CGTTATCCCTACGAAAGCGAGG 2802199 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGA 76340 | |||| | || | |||||||||||||| || | | ||||||| || | Sbjct 2802200 AGGCCAGCCTCTTAAACCAACAGATCTTTGAAACCATTTACTTTGGAGCCCTGGAAGCCA 2802259 Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-C 76399 |||| ||| |||| || | || ||||||| || | ||| || ||| ||| Sbjct 2802260 GTTGCGAACTGGCCCAAAGGGACGGCACCTATGAAACTTATGAAGGAAGTCC--GGTCAG 2802317 Query 76400 CAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAAC-CAAGCTCAAC--TACGACTG 76455 ||||| | || |||| || |||||||| | |||| | | | | | ||||| Sbjct 2802318 TAAGGGAATTCTGCAGTACGACATGTGGGA---TAAAACGCCGACAGATCTTTGGGACTG 2802374 Query 76456 GGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 76515 | | | ||| ||||| |||||| | | || || | ||| |||||| |||| || Sbjct 2802375 GAAAGGTCTGAAGGAGTCCATCAAAAAACATGGAGTTAGAAACTCCCTTTTGGTGGCTCC 2802434 Query 76516 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACAC 76575 ||||| ||||| || || || ||||| |||||||||| |||| ||| || || || || Sbjct 2802435 GATGCCCACAGCATCGACTGCTCAAATTATGGGTAATAACGAATCCTTCGAGCCCTATAC 2802494 Query 76576 AACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCT 76635 |||||| || || ||| | ||| | || ||||| | |||||| | || | Sbjct 2802495 AACAAATATTTATACAAGACGCGTACTCTCTGGCGAGTTCCAAGTGGTCAACCATCATTT 2802554 Query 76636 CGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT-GA 76694 | | || | | | || | | | | ||| | | || |||||| ||| || | Sbjct 2802555 GCTGAGGGATTTGACGGAGCTGGATTTGTGGGACGATGACATGAAGAATCAGATCATATC 2802614 Query 76695 AAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACC 76754 ||| || || |||||||||||||| | || ||| | | || | || ||| Sbjct 2802615 CAGCAGG-GGATCCATTCAAAATATTGAATCAATTCCACAAAAGGTCCGAGACCTTTACA 2802673 Query 76755 GCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCT 76814 ||||| ||||||||| | ||| ||| | |||||||||||||| ||| | Sbjct 2802674 AAACAGTTTGGGAAATCTCAGTTAAATCAACAATTAAAATGGCCGCAGATCGCGGTGCGT 2802733 Query 76815 TCATTGATCAAAGTCAAAGTATGAATCTATTCAT---GGAAAGTCCAACGATGTCCAAGC 76871 | || ||||| || || | || ||| ||| | | || | ||| ||| |||| Sbjct 2802734 TTATAGATCAGAGCCAGTCCTTCAA--TATCCATGTGGCAGAGCCAAACTATG-GAAAGC 2802790 Query 76872 TCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCC 76931 || | || || ||| | ||| | |||||| || || ||||||||||||||||| | | Sbjct 2802791 TCACATCCATACATTTCTACTCCTGGAAAGCTGGTCTTAAAACCGGAATGTACTACTTGC 2802850 Query 76932 GATCAAAG 76939 | ||||| Sbjct 2802851 GCACAAAG 2802858 >seq947 Length=14288 Score = 113 bits (124), Expect = 5e-20 Identities = 332/502 (66%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||| | |||||||| | || |||| |||||| | || || ||||||||||| || Sbjct 8577 TGATGTAGCCGGGATTGATGAAGCTAAAGGGGAACTTCAGGAAATCGTGGATTTTCTGAA 8518 Query 175251 GCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCG 175308 | || | ||| ||| | | || | || || ||| ||||| || || | | Sbjct 8517 --AGACCCACAGAAGTTTACGCGCTTGGGCGGTAAAATTCCCAAAGGCGTGCTGCTTGTG 8460 Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368 || ||| || || || || ||||| | ||||| ||||| || |||||| | ||||| Sbjct 8459 GGGCCGCCGGGCACTGGTAAAACCCTGTTGGCCCGCGCCATTGCAGGTGAAGCCAATGTA 8400 Query 175369 CCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || ||| | ||| ||||| | |||||||||| ||||| || ||||| ||||| Sbjct 8399 CCGTTCTTTACCA--TCTCTGGTTCCGACTTTGTGGAAATGTTCGTAGGTGTTGGTGCAT 8342 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCG---AAAATCA--ACCATGTATTGTCTT 175481 | || || || | || ||| | | | ||||||| || || ||| |||| Sbjct 8341 CCCGTGTGCGTGACATGTTCGAA-----CAGGGTAAAAAATCAGCTCCTTGCATTATCTT 8287 Query 175482 CATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT-GGTATGCCAGCAAATG 175540 ||||||||| |||||||| || || || || | || ||| | || | || |||| Sbjct 8286 CATTGATGAAATTGATGCCGTTGGTCGCCATCGTGGTGCAGGTATGGGTGGCGGC-AATG 8228 Query 175541 ACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATG 175597 | ||| | || || ||| | || || | || ||||||||||| ||||| ||||| Sbjct 8227 ATGAGCGCGAGCAGACACTGAACCAGATGCTGGTTGAGATGGATGGTTTTGAAAGCAATG 8168 Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657 | ||| | | | ||||| ||||| || || |||| | ||||| || | | Sbjct 8167 A---AGGCGTGATCCTGATTGCCGCCACCAACCGTCCGGATGTGCTTGACCCGGCATTGC 8111 Query 175658 TTCGCCCGGGTCGTTTTGATCG 175679 | || || |||||||| || || Sbjct 8110 TGCGGCCCGGTCGTTTCGACCG 8089 >seq5413 Length=1192065 Score = 82.4 bits (90), Expect = 9e-11 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399 ||||||| ||| || | | | |||||| || ||||| ||| | || || |||| Sbjct 479833 AGCGCTCCATTCCCAGTCTTGTGGATGGCCTGAAGCCCGGCCAGCGCAAGGTCATGTTCA 479892 Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459 | |||||| | | || ||| ||| ||||||| || || || | | | || | Sbjct 479893 CCTGCTTCAAGAGAAACGATAAGCGAGAAGTGAAGGTAGCCCAGTTGTCCGGTTCAGTGG 479952 Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGAC-ACGATTGTTAAGTTG 14518 | || | ||| || |||||||| || || || || | || || || || || || ||| Sbjct 479953 CCGAGATGTCGGCCTACCACCACGGAGAGGTCTCACT-GCAGATGACTATCGTGAATTTG 480011 Query 14519 GCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGT 14578 ||| | |||| ||| || ||||||||||| || ||||| || | ||||| || ||| Sbjct 480012 GCACAAAACTATGTGGGCTCCAACAACATTAATCTGCTTGAGCCACGAGGTCAGTTCGGT 480071 Query 14579 ACGCGTCTCATGGGTGGTAAGGAT 14602 || || | | ||| || |||||| Sbjct 480072 ACTCGCTTGACGGGAGGCAAGGAT 480095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596528585840000