Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5215 98.7 1e-15 >seq5215 Length=2160492 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | ||||| |||||||||||||| || || || || || || Sbjct 1797738 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCC 1797679 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||||| ||| || || ||||| || || ||||| || ||||| Sbjct 1797678 TCCGATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGAC 1797619 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | ||||| | ||||| ||||||||||| ||| | | || | || || || Sbjct 1797618 CAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 1797559 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || ||| |||| ||||| || || Sbjct 1797558 AACATCCAGAAGGAGTCGACCCTTCACTTGGT 1797527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731821683800000