Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5218 98.7 2e-15 >seq5218 Length=3038582 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || || || || |||| ||| || ||| ||||| || || Sbjct 2718270 ACCACCACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGA 2718329 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || |||| || || ||||| || || | | ||| || || || || Sbjct 2718330 GAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 2718389 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| || || || || ||| ||||| || ||||| |||| ||| || Sbjct 2718390 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 2718449 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTA 172076 || ||||| ||||| || || || | || |||| ||| |||||||| || |||| Sbjct 2718450 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGATTA 2718505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905073771900000