Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1385 136 1e-26 seq5218 131 5e-25 seq947 129 2e-24 seq5008 127 6e-24 >seq1385 Length=14403 Score = 136 bits (150), Expect = 1e-26 Identities = 335/496 (68%), Gaps = 14/496 (3%) Strand=Plus/Plus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||| | ||| | |||||| || ||||| || | | ||| | | ||| ||||| || Sbjct 4794 TCAAATCGACCTGGACGAGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCA 4853 Query 288913 AATACAACAATAGATTCGGTTTGCT-TAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971 | |||| | | ||| || || |||| |||||||| ||| | ||||||||| Sbjct 4854 ATGACAATGACACCTTCA-TTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAG 4912 Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACC 289031 |||||||| | |||||| | || | | || ||| ||| | | |||| | || Sbjct 4913 GGTTTGTTCACGTTCATCGT--GACCGCCGCCCATT--CCGGATC-CACGTTTTCGT-CC 4966 Query 289032 AACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAA 289091 ||| ||||||||||| ||||| || || | || | ||||| | || ||||| Sbjct 4967 AACGGCATCAATTTCATCAATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAA 5026 Query 289092 TAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGA 289151 ||| ||||| || ||| || |||| ||| ||| ||||||| || || || || | || Sbjct 5027 TAAATCTCTAACCCGGCTAGCACCAACACCCACAAACATTTCAACGAAATCTGATCCAGA 5086 Query 289152 TACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 || | |||| ||||| ||||||||||| || || || || | || || | ||||||| Sbjct 5087 TAAT-GAATAGAATGGAACATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTAC 5145 Query 289211 CTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT--T 289268 | || ||||| |||||||| | || ||| || || || | || ||| || | | Sbjct 5146 CGGTACCAGGAGGTCCCTCAAGTAAAACACCTTTGGGAATGACGGCACCA--AGTTTAGT 5203 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 | |||||| || ||| || ||||| |||| ||| | ||||| | ||| | ||||| Sbjct 5204 AAATTTCTTCGGATCCTTCAAGAATTCAACAACTTCAACCAGTTCTTGTTTCTCTTCATC 5263 Query 289329 ACATCCTGCTACATCA 289344 || || |||||| Sbjct 5264 TTCACCAGCAACATCA 5279 >seq5218 Length=3038582 Score = 131 bits (144), Expect = 5e-25 Identities = 555/863 (64%), Gaps = 19/863 (2%) Strand=Plus/Minus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || | ||||||||| || || || | || |||||||| ||||| | | |||| Sbjct 2802162 GTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTT-CTTGG 2802104 Query 155465 CTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCT 155523 | || | ||||||||| || | ||| || || ||||| | ||| | ||| || Sbjct 2802103 CCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCT 2802044 Query 155524 TGGTTACGTCTGCTAA--TTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACC 155581 | || || || ||| ||| | ||||| ||||||| || | |||||||| Sbjct 2802043 TTGTGACCTCCT-TAAGCTTTTTGA-AGTCATATGTTTTCTCTGGCGTCACAAACATGTT 2801986 Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGT-CGTCGCTGTATTCTACAA 155640 ||| | || || |||| ||| || || ||| |||| | | || | ||| || |||| Sbjct 2801985 GAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGA-GTACTCGACAA 2801927 Query 155641 TCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGT 155700 | || |||||| ||| | || |||||||| | |||| ||||| || | || Sbjct 2801926 TTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGT 2801867 Query 155701 TACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760 | || || |||||| | || ||||| || | || ||||||| || | || | || Sbjct 2801866 TGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATGG 2801807 Query 155761 TTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATATT 155817 | ||| | | | || || | || | || | || | ||| || |||| Sbjct 2801806 CGAACCACAAGGACTGTGCTTTTACAGTTCGGTTTGCGCGTC---CCTCCTGTTCGTATT 2801750 Query 155818 TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877 ||| ||| ||| || | || || || | |||| ||||||||||| || | || Sbjct 2801749 TCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGG 2801690 Query 155878 GGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCC 155937 | || || |||||||| | ||| | || || | ||| || | ||| || Sbjct 2801689 GACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTATCC 2801630 Query 155938 AAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 | | |||||||| | || | || | || ||| || | ||| ||||||| || Sbjct 2801629 ACAGGGCATAGAACAAATCACGGGCTCGATG-CTCTTCCTTGCCAGTATTCTTCTTAAGG 2801571 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | || || || ||| | ||| ||||| ||||| || ||||| || | Sbjct 2801570 TCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGGC 2801511 Query 156057 CTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | ||||||||| |||||| ||||| || || || || ||||| | ||||||||| Sbjct 2801510 CGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCATAGGA 2801451 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 | | ||||||||||||||| |||||||||| ||| | ||| || |||| | | Sbjct 2801450 ACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTTTGCACGAATACAA 2801391 Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233 || | || || ||||||||||||| | || || || ||||||| || || | Sbjct 2801390 TGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATGGCGCATTGCTCAACTGAC 2801331 Query 156234 TTGAAAATACCTTCAATAGAATC 156256 ||||| ||||| ||||| || || Sbjct 2801330 TTGAAGATACCCTCAATCGAGTC 2801308 >seq947 Length=14288 Score = 129 bits (142), Expect = 2e-24 Identities = 232/330 (70%), Gaps = 12/330 (4%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA--ATTTTGTCTCGCAATT 289086 |||||| ||||||||||| |||||||| || | || |||| ||||| | | | || Sbjct 8262 ACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACC-CTGTT 8320 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || | ||||||||||| |||| ||| || ||||||| ||||| || ||| Sbjct 8321 -CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 8379 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | || ||| | |||||| ||||| ||||| | || | |||| || || Sbjct 8380 CCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 8439 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT---GCCCCAGCA 289263 ||||| || || || || ||| | | || || ||||||| | |||| |||| ||| Sbjct 8440 TTACCAGTGCCCGGCGGCCCCACAAGCAGCAC-GCCTTTGGGAATTTTACCGCCCAAGC- 8497 Query 289264 GACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | || | |||| ||| ||||| | ||| || || ||||||| |||||| ||| || Sbjct 8498 -GCGTAAACTTCTGTGGG-TCTTTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 8555 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||||| || ||||||||| |||| || Sbjct 8556 TTCATCAATCCCGGCTACATCATCAAACGT 8585 >seq5008 Length=644625 Score = 127 bits (140), Expect = 6e-24 Identities = 190/264 (72%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| | || || ||||| ||| Sbjct 618213 TCCATAGCCTTTATCAGACGACGCTGGATGTAACCGGTTTCGGCCGTCTTGACAGCAGTA 618272 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| | ||||||||||| || |||||| | | ||| || ||| ||||| Sbjct 618273 TCGATGAGACCCTCGCGACCACCCATGGCGTGGAAGTAGAACTC-GGAGGGCGTCAGCCC 618331 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | | ||| |||| ||||| || |||| |||||| || ||||||| |||| | Sbjct 618332 GGCCAGATACGAGTTCTCCACGAAGCCTCGCGACTCGGGACCGTAATCGTC---CTTGAT 618388 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| |||||||| | || | || || |||||||| || || || |||||||| Sbjct 618389 GAAGTGGGGCAGGGTGCGCTTGCGGAACCCATACGGGATACGTTTACCCTCCACGTTCTG 618448 Query 302811 CTGTCCCAGGCACGAAATCATCTG 302834 ||| |||| || | ||| | ||| Sbjct 618449 CTGGCCCACACAAGCAATAACCTG 618472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471713882853500