Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5058 159 4e-33 seq5008 132 6e-25 seq3801 125 9e-23 seq5073 111 2e-18 >seq5058 Length=888176 Score = 159 bits (176), Expect = 4e-33 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||||||||||||| |||||||| || || | | ||||| ||| || Sbjct 511371 AGAAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAGGTCGACCAGGGCA 511430 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | |||||||| ||||| | || |||||||| | ||||||||| ||||| || || Sbjct 511431 CACTCTTTGAACTGATCTTGGCGGCCAACTATTTGGACATCAAGGGGCTGCTGGAGCTCA 511490 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| |||||||||| ||||| ||||||||| | || ||||||||||||||||||| Sbjct 511491 CATGCAAGACTGTGGCCAATATGATTAAGGGCAAGACACCGGAGGAGATCCGCAAGACCT 511550 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 511551 TCAACATCAAG 511561 >seq5008 Length=644625 Score = 132 bits (146), Expect = 6e-25 Identities = 212/299 (71%), Gaps = 14/299 (5%) Strand=Plus/Minus Query 507598 GGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATG---AACCGGCAGCCGTCGCT 507654 ||| ||||| ||| |||||| ||||| |||| || ||||| ||||| |||| Sbjct 619545 GGTGGAGCGGCACTTGCGCGA---CGACGATCTGGTCATCTTCAACCGCCAGCCCACGCT 619489 Query 507655 GCACATGGGCTCCATGCTCATGCACAAGGTG---GTGCCCATGCCCGGGCGCACCATGCG 507711 ||||| | ||| | ||||| |||| |||| |||| || |||| | || Sbjct 619488 GCACAAGATGAGTATGATGGGGCACAGGGTGAAGGTGC---TGCCGTGGTCCACCTTCCG 619432 Query 507712 ATTCAACCTGGCC-GTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACC 507770 | | |||||| || || | || ||||||||||||| || ||||||||||||||||||| Sbjct 619431 AATGAACCTGTCCTGTACCTCGC-CCTACAACGCCGATTTCGACGGCGACGAGATGAACC 619373 Query 507771 TGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGC 507830 |||||||||| |||||| | | |||||||||||||| | ||| | | | | | | Sbjct 619372 TGCACGTGCCGCAGTCCATGGAGACGCGCGCCGAGGTGGAGAACATCCACATCACGCCCC 619313 Query 507831 TCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGACGCCCTC 507889 ||| | | |||||||||||||||||||| |||| || | || |||| ||||| Sbjct 619312 GGCAGATCATCACGCCGCAGGCCAACAAGCCCGTCATGGGTATTGTGCAGGACACCCTC 619254 >seq3801 Length=1020888 Score = 125 bits (138), Expect = 9e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 ||||||| |||||||||| | || ||||| || || | | || || | | ||| Sbjct 459500 AAGCGCATCGACGACATCAAGTCGAGGGACGCCGAATTCCTCAAGGTGGACCGGGAGACC 459441 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| || ||||| | || |||||||| || ||||||||| ||||| || || | Sbjct 459440 CTCTTCGAACTGATCATGGCGGCCAACTATCTGGACATCAAGGACCTGCTGGAGCTCACG 459381 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| |||||||| ||||||||||||||||| | || ||||| ||||| | || ||| Sbjct 459380 TGCAAGGCTGTGGCCGACATGATCAAGGGCAAGACACCGGAGGAAATCCGAATGATCTTC 459321 Query 1592288 AACATCA 1592294 || |||| Sbjct 459320 AATATCA 459314 Score = 118 bits (130), Expect = 1e-20 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1592109 AGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCC 1592168 |||||||||||||||| ||||||||| || || | | || || ||| ||| Sbjct 461185 AGCGCACCGACGACATTATGCCGTGGGATGCCGACTTCCTCAAAGTGGACCAGGGCACTT 461126 Query 1592169 TCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGT 1592228 |||| || ||| | | || |||||||| || |||||||| |||| || || || Sbjct 461125 TCTTCGAACTGACCATGGCGGCCAACTATCTGAACATCAAGGGCCTGCAGGAGCTCACGT 461066 Query 1592229 GCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTA 1592288 ||||| || ||||||||||||||||||||||| | || ||||| ||||| |||||| | Sbjct 461065 GCAAGACTTTGGCCAACATGATCAAGGGCAAGACACCGGAGGAAATCCGATTGACCTTAA 461006 Query 1592289 ACATCAAG 1592296 | |||||| Sbjct 461005 ATATCAAG 460998 >seq5073 Length=2625208 Score = 111 bits (122), Expect = 2e-18 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| ||||| ||||| || | |||||| || || | ||||| ||| || Sbjct 1085513 AGAAGCGTACCGATGACATTTCCTCTTGGGACGCCGATTTCCTGAAAGTCGATCAGGGCA 1085572 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||| | ||||| || ||||| ||| | ||||| || ||| | ||| | Sbjct 1085573 CTCTGTTCGAGCTCATCCTAGCGGCCAATTACTTAAACATCCAGGGCCTGTTGGATGTGA 1085632 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 || ||| |||||||||| |||||||||||||||||||| ||||||| ||| | || | Sbjct 1085633 CCTGTAAGACTGTGGCCAATATGATCAAGGGCAAGTCGCCTCAGGAGATTCGCGACACGT 1085692 Query 1592286 TTAACATCA 1592294 ||| ||||| Sbjct 1085693 TTACCATCA 1085701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106687844243500