Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_021861.1 Length=30910 Score E Sequences producing significant alignments: (Bits) Value seq995 89.7 1e-13 >seq995 Length=30878 Score = 89.7 bits (98), Expect = 1e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 5079 TTTCAAAAATGCCAATGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCTGGCGACA 5138 ||||| ||| | ||||| || || ||| | || || | ||||||||||| |||||| | Sbjct 6940 TTTCACCAATTCGAATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTTGGCGAAA 6999 Query 5139 ACAAGCTGAAAATATGGCAAATTTCACACATAAAGG-AAGCTTGATTGGTATCACTGGTA 5197 | ||||||||| | || || ||| ||||| || |||| |||| ||| ||| Sbjct 7000 ATCAGCTGAAAACTTTGCCAACTTCGTGCATAAGGGTTCACTTG-TTGGAATCGAAGGTC 7058 Query 5198 GAATCCAAACTCGAAACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTG 5257 | || || || ||||| || || || | || || ||||| ||||| ||||| ||||| | Sbjct 7059 GGATTCAGACCCGAAATTACGAGAACAAGCAGGGCCAACGAGTTTATGTTACCGAAGTAG 7118 Query 5258 TTG 5260 ||| Sbjct 7119 TTG 7121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98783947752000