Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5218 291 7e-74 seq5076 131 2e-25 seq5215 125 6e-24 seq5008 120 3e-22 >seq5218 Length=3038582 Score = 291 bits (322), Expect = 7e-74 Identities = 1182/1851 (64%), Gaps = 35/1851 (2%) Strand=Plus/Minus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 || || || ||||||| ||||| | || ||||| || || | || || |||||||| Sbjct 2802893 TTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCG 2802834 Query 138214 GTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGT 138273 ||||| | ||| || ||||| ||| | ||||| || ||||| | || | || Sbjct 2802833 GTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGGC 2802774 Query 138274 TTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCC 138333 | |||| | || || || || || |||||||| || || || || ||||| |||| Sbjct 2802773 TCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGCC 2802714 Query 138334 ATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATGT 138393 || |||||| |||| | || ||||| || || ||||| || || || | | | Sbjct 2802713 ATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGGACCTTT 2802654 Query 138394 CGCGGTATTGTTGCAATATTTTGAATGC-TCCCGTTGGCCGCA-ATGATGCGATTTCTCA 138451 | || |||| | |||||||||||||| |||| | || | | ||||| |||| ||| Sbjct 2802653 TGTGGAATTGATTCAATATTTTGAATGGATCCCCT--GCTGGATATGATCTGATTCTTCA 2802596 Query 138452 TGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCT 138511 ||||||||| ||| || || || |||| || | | || || ||| | || | Sbjct 2802595 TGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCACTT 2802536 Query 138512 GAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATT 138571 | || || || | | ||| || | ||||| || | || | ||||| || |||| Sbjct 2802535 GGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATT 2802476 Query 138572 CGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAAT 138631 |||| || |||| ||| ||||| || | || || ||||| ||||||||||| || | Sbjct 2802475 CGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGT 2802416 Query 138632 TCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAG 138691 | | | || || ||||| ||||| || ||||||||| | ||| | | Sbjct 2802415 TTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTGTCG 2802356 Query 138692 GTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACG 138751 | |||| | |||||| |||||||| | |||||| ||| | ||||| ||||| || | Sbjct 2802355 GCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAAG 2802296 Query 138752 AATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAA 138811 || || || | ||| |||| ||| || || || || || ||| |||||| Sbjct 2802295 TTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAA 2802236 Query 138812 TAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGA 138871 | ||||| ||||| || || | | | |||||| |||| ||||| || || | Sbjct 2802235 TGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATAACGCA 2802176 Query 138872 GCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGAT 138931 | | | |||||| ||||| || || ||||| | || | ||| ||||| | | || Sbjct 2802175 TAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAAT 2802116 Query 138932 TTGACGCTTTTGCGGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATT 138989 | || ||| | | || || | || ||| |||||| ||| || || || || | || Sbjct 2802115 TGGA--CTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTT 2802058 Query 138990 TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTC 139049 || | ||| ||| || | ||| | || || || ||||| | | || | Sbjct 2802057 TCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTC--TGGC 2802000 Query 139050 GTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTC 139109 ||| ||||| |||||| | ||||| || | ||||| || || | || Sbjct 2801999 GTC----------ACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTC 2801950 Query 139110 GTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAA 139169 |||||| ||| ||||||||||| | |||| |||||| || || || || || | Sbjct 2801949 GTCGGGCGAAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCAC 2801890 Query 139170 ATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGT 139229 || ||||| ||||| |||||||| || || || ||| | ||||| || || ||||||| Sbjct 2801889 GTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGT 2801830 Query 139230 TTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA---TTTGACGCAC 139286 |||||||| | ||| || ||| ||||| | |||| || || | | Sbjct 2801829 CTCCACTTGCGACTCAATGATGGCGAACCACAAGGACTGTGCTTTTACAGTTCGGTTTGC 2801770 Query 139287 GTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTC 139346 | || | || | ||||| || | || || | || || || || | | || Sbjct 2801769 G---CGTCCCTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATC 2801713 Query 139347 AGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCG 139406 | ||| | | || |||| ||||| | |||||||| | | || |||| || || Sbjct 2801712 ATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCG 2801653 Query 139407 CCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTC 139466 ||||||| ||||| || ||||||| || | | |||||| || || | ||||| Sbjct 2801652 TTTCATGAAGAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTC 2801593 Query 139467 CGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAG 139526 | || | || || | || || || |||||||| || | ||||| || || || Sbjct 2801592 CTTGCCAGTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAG 2801533 Query 139527 ATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATT 139583 ||| ||||| | || || ||| ||| ||||| ||||| || | |||| | | || Sbjct 2801532 ATAAATGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTT 2801473 Query 139584 ATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGG 139643 || || || | || ||| || ||||||| | | || |||||||| | | |||| Sbjct 2801472 GTTAAAGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGA 2801413 Query 139644 ACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATAT 139703 | | || || | ||| ||||| | || || || || || | ||||| || Sbjct 2801412 AGTACCCTTTGCACGAATACAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGAT 2801353 Query 139704 TAAAACGCAATCGCGTAA-TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGA 139762 | ||| || || || || || | | ||||| || |||| ||| || | Sbjct 2801352 CATGGCGC-ATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCA 2801294 Query 139763 CCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCG 139822 ||||| || ||||| || || || | || ||| | || ||||| || || || | Sbjct 2801293 GGAGAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAG 2801234 Query 139823 CGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCC 139882 |||||||||| | | ||| | ||| | |||||| || | ||| | || || Sbjct 2801233 CGTGCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTT 2801174 Query 139883 TTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGC 139942 ||| ||||| |||| | || ||||| ||||| || ||| || ||||| | | Sbjct 2801173 CTCCATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTAC 2801114 Query 139943 CCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 | | |||||| || || | || ||| || |||||| | |||||||| Sbjct 2801113 CATTGATTTTAAGGAGGTACGAACG--CTCCAGAGTCTTGAATCCAAAGTA 2801065 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || || || || || || || || || || ||| | | Sbjct 2718498 GATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTC 2718439 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| ||||| || |||||||||||||| ||||| ||||| Sbjct 2718438 GGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCA 2718379 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || |||||||| ||| | | | | || || ||||| Sbjct 2718378 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAA 2718319 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||| ||||| || || | ||||||||| |||| Sbjct 2718318 CATTCAGAAGGAGTCTACCTTGCACTTGGTGCTGCG 2718283 >seq5076 Length=596799 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | ||||| || || || || || || || ||||| || || | Sbjct 35087 ACCATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCT 35146 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| ||||||||||| || || |||||| Sbjct 35147 TCGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGAT 35206 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||||||||| || |||||||||||| | | | | || || || Sbjct 35207 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 35266 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| || || ||||| | || ||||||| || Sbjct 35267 AACATCCAGAAGGAGTCGACCCTGCATCTGGTGCTCCGTCTGCGCGGTGG 35316 >seq5215 Length=2160492 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || ||||| || || || || || || || | || Sbjct 1797279 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797220 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1797219 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797160 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||| |||||| | | | | || ||||| ||| Sbjct 1797159 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAAC 1797100 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || ||||||||| | || |||||||||| Sbjct 1797099 ATCCAAAAGGAGTCAACTCTTCACTTGGTGCTACGTCTGCGCGGAGG 1797053 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || ||||| || || | || || || || || Sbjct 1797735 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCCTCC 1797676 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||| || || || || || || || Sbjct 1797675 GATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1797616 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||| |||||| | | | | || || || ||| Sbjct 1797615 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 1797556 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || |||| || || Sbjct 1797555 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 1797509 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || ||||| || || || || || || || | || Sbjct 1797507 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797448 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1797447 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797388 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||| |||||| | | | | || || || ||| Sbjct 1797387 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 1797328 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || |||| || || Sbjct 1797327 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGG 1797281 >seq5008 Length=644625 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || || || Sbjct 342762 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCC 342821 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || ||||| Sbjct 342822 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 342881 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | | |||| || || ||| Sbjct 342882 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 342941 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| || || | || ||||||||||| ||||||| |||| Sbjct 342942 ATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGCGTCTGCGCGGCGGCG 342990 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || || || || ||||| || || || || Sbjct 342534 ATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCC 342593 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || ||||| Sbjct 342594 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCAG 342653 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | | |||| || || ||| Sbjct 342654 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 342713 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| | || | ||||||||| Sbjct 342714 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCCGCGGAGGC 342761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449866669540000