Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3612 102 7e-17 seq5076 86.0 5e-12 seq5017 86.0 5e-12 >seq3612 Length=22961 Score = 102 bits (112), Expect = 7e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACAC-GAT 34313 || ||| |||||||||| ||||| |||| | ||| | | ||||| || ||||| ||| Sbjct 1491 CCATGAAAACCGCATGCCTTGCACGACTGAGAAATAGTCTGGTTTTTGGCAGACACTGAT 1432 Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 | | |||||||||||||||||||| ||||| || ||||||||||| || || ||||| Sbjct 1431 AAATTT-GTCTCCGGGTTGTCACATTCAGGACATAATACAAACTTGCGAATAAATCCATC 1373 Query 34374 AAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAA 34421 | || ||||| || ||| || ||||| ||||| || || || Sbjct 1372 CAACAAATCCTGCAATTTATTAACATCATGGGATCCGTTTACTATAAA 1325 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 || || || || ||||| || || || || ||||| || || | || || || |||| Sbjct 1232 GTCTGAGCACCGAGCTCACATCCAAAATATTTTGTTGGATAGGTAGCAGGGCGCCCAATA 1173 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 || || | ||| | |||||| || | ||| |||||||| || |||||||||||||| Sbjct 1172 GCGCGAGCTACTTCTGCCATGTTTACAAGGACTGTCTTGATACCATTGCCCTTTCCTTCC 1113 Query 34567 ACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGT 34624 || || || ||| | || |||||||| || || ||||| ||| | ||| | |||| Sbjct 1112 ACTTTTGCTTGCAAA--CGTGGCATTTTATAACGATAGAAGATGTCAGTAACACTTCGGT 1055 Query 34625 TAACGTTCACAGTCCCCAT 34643 ||||||| || || |||| Sbjct 1054 TAACGTTAACGGTGGCCAT 1036 >seq5076 Length=596799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| | || ||||| ||||| ||| |||| |||||| Sbjct 35090 ATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTCG 35149 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||||||||| | ||| ||||| Sbjct 35150 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATCAG 35209 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| | | || | |||| |||||| Sbjct 35210 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAAC 35269 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || |||| ||||| | | ||||| || || Sbjct 35270 ATCCAGAAGGAGTCGACCCTGCATCTGGTGCTCCGTCTGCGCGGTGG 35316 >seq5017 Length=1730897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || |||||||||||||| |||||||| ||||| |||| || ||||||||| | |||| | Sbjct 723007 GGTCTGCACGGCTTCCATGTGCACGAGTTTGGTGACAACACCAACGGCTGCATGTCCTCT 722948 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAA-AGGC 107288 ||| || ||||| |||||| ||| | |||||||| || | || | |||| | | Sbjct 722947 GGTCCTCATTTCAA-CCCACACGGCAAGGAGCACGGTGCCCCTGGCGATG-AGAACCGCC 722890 Query 107289 ACGTCGGCGATCTGGGCAAC 107308 || | |||||| |||| ||| Sbjct 722889 ACTTGGGCGATTTGGGAAAC 722870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412813926711500