Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3794 168 1e-35 seq5403 132 8e-25 seq5058 131 3e-24 seq5008 122 1e-21 seq3801 109 9e-18 seq5073 98.7 2e-14 >seq3794 Length=64027 Score = 168 bits (186), Expect = 1e-35 Identities = 358/530 (68%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 2411449 GGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAG 2411508 ||||| | | |||||||||||| ||||||||| ||||||| | | ||| Sbjct 5951 GGGTTCATGAAGTGGATGCGCTTCTCATAGCCCAGCTGGGGCAGGTACTTTTCAGAGAAG 5892 Query 2411509 GCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 2411568 | |||||| || ||||| || || |||||||||||||| || | |||| || |||| Sbjct 5891 GTAAAGATTTTACGCTGATCCACGCCACCAAACTGGGCGTCCACCTTCAGGTACTCCTCG 5832 Query 2411569 TCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTG 2411628 || |||||||||| ||||| | | |||| | |||| || |||| Sbjct 5831 TCCAGGGCCTGCAGTCCTGGGTAAAGCAATCCAGAGAGCAGAGGGTACTCCACCTGCTTG 5772 Query 2411629 ACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCA 2411686 ||||||| || |||||| |||||| ||||| || ||||| || | || Sbjct 5771 ACCACCTCAGCTCCGGCCTTCTTTGCGTCGTGCTGA--GTCACAACCGAGCTTAGTTTGT 5714 Query 2411687 AGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGAC 2411746 | | ||||| ||||| | | | ||||||| |||||||| || || | || Sbjct 5713 ACACATCGAGGGTGTATTCCTTGGAAAGCTGGTAGTCGCTGCCCTTGACGAACTTCAGCT 5654 Query 2411747 GATCCAGCGGGACGCCAAT-GTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGG 2411805 || || || || ||||| | ||| |||||||| ||||| | |||||| | || Sbjct 5653 TCTCGAGTGGAACCCCAATGGAGCT-CAGCATGGCTTTGATAACCTGCTCGTAGTACTGG 5595 Query 2411806 CACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCG 2411865 || |||| | |||| |||||||| ||| ||||| |||| |||||||| |||| Sbjct 5594 GTCCTCAGCTCCAAGAGGGACCACGGCGCCTTCATGTTGTCCAGGTAGGCGTGCAGGTCG 5535 Query 2411866 GCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGC 2411925 ||||| ||||| | ||| || ||||||| || || ||||| | || | |||||| Sbjct 5534 GCAAACAGGATGGTGACCTCGCAGCCGGCCTTCAGGAAATCGGCAATCTTCGACATGGGC 5475 Query 2411926 ACAAAGTAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 || |||||| | | ||| || |||||||||| ||| || ||||| || || Sbjct 5474 ACGAAGTAGGCGACATGTGGTTTGCCCGTCGTCGCCGTTCCCCAGTAGAT 5425 >seq5403 Length=2915140 Score = 132 bits (146), Expect = 8e-25 Identities = 227/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | ||||| |||||| ||| || || ||||| || || |||||| Sbjct 122029 CCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGACCTCGCTTC 121970 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||| || || ||| ||||| ||||| ||||| ||||| Sbjct 121969 TTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATTCCCTCTACGGCAGCAAAA 121910 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| || ||||| |||| || | || | | | | |||||| || |||||| Sbjct 121909 GCGATGATGCGCTCTCCAAAGTTGGC-AGAC--TTTGAGGAGATCCAGGCCAGCGCCCAA 121853 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | |||||| |||| ||| || ||||| || |||| || || | Sbjct 121852 TCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAACAGGTACTCGCGCTGG 121793 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || || | | ||| ||||||||||| | ||| |||| ||||| | |||||| Sbjct 121792 TGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCCGAGTGTACGTTTTCC 121733 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||||||| |||||||||||||| ||| Sbjct 121732 ATGGCGATTTGGAAGCCATAAAAACAG 121706 >seq5058 Length=888176 Score = 131 bits (144), Expect = 3e-24 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||||||||| |||||||| | || | |||||||||| | Sbjct 511370 GAGAAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAGGTCGACCAGGGC 511429 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || |||||||| ||||| | || |||||||| | ||||||||| || || || | Sbjct 511430 ACACTCTTTGAACTGATCTTGGCGGCCAACTATTTGGACATCAAGGGGCTGCTGGAGCTC 511489 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| |||||||| | || ||||||||| | || ||||| |||||||||||| Sbjct 511490 ACATGCAAGACTGTGGCCAATATGATTAAGGGCAAGACACCGGAGGAGATCCGCAAGACC 511549 Query 2035746 TTTAACATCAAG 2035757 || ||||||||| Sbjct 511550 TTCAACATCAAG 511561 >seq5008 Length=644625 Score = 122 bits (134), Expect = 1e-21 Identities = 211/299 (71%), Gaps = 16/299 (5%) Strand=Plus/Minus Query 429528 GTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCAC 429587 || ||||| ||| ||||| || ||| | || || | ||||| ||||| |||| ||| Sbjct 619544 GTGGAGCGGCACTTGCGCGACGACGATCTGGTCATCTTCAACCGCCAGCCCACGCTGCAC 619485 Query 429588 ATGGGGTCGATGCTCAACCACAAGGTG---GTGCCCATGCCC-GGTCGCACCTTCCGGCT 429643 | | | ||| | |||| |||| |||| |||| |||| ||||||||| | Sbjct 619484 AAGATGAGTATGATGGGGCACAGGGTGAAGGTGC---TGCCGTGGTC-CACCTTCCGAAT 619429 Query 429644 CAACCTGGCC-GTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 429702 |||||| || || | || ||||||||||||| || |||||||||||||||||||||| Sbjct 619428 GAACCTGTCCTGTACCTCGC-CCTACAACGCCGATTTCGACGGCGACGAGATGAACCTGC 619370 Query 429703 ACGTGCCCCAGTC---GGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGCGTGGCCC 429759 ||||||| ||||| ||||| | |||||||| || | ||| | | | ||| Sbjct 619369 ACGTGCCGCAGTCCATGGAGA---CGCGCGCCGAGGTGGAGAACATCCACATCACGCCCC 619313 Query 429760 TCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGACGCCCTC 429818 || | | |||||||||||||||||||| |||| || | ||| |||| ||||| Sbjct 619312 GGCAGATCATCACGCCGCAGGCCAACAAGCCCGTCATGGGTATTGTGCAGGACACCCTC 619254 Score = 86.0 bits (94), Expect = 1e-10 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 429032 GTCGGGCAAGCCCACCAAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCG 429091 ||| |||||||| |||| | || || || || |||||||||||||| || || || Sbjct 619887 GTCCGGCAAGCCGCTGAAGGCCATCAAGGCCCGTTTGAAGGGCAAGGAGGGTCGAATTCG 619828 Query 429092 CGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCC 429151 ||||| | ||||||||||| || |||| | || || | ||||||| || || || Sbjct 619827 TGGCAACTTGATGGGCAAGCGTGTGGACTTCTCCGCCCGTACGGTCATCACACCGGATCC 619768 Query 429152 CGAAATCGAC--ATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTT 429209 | |||| | || ||| |||| || || || |||| | ||| || ||||| Sbjct 619767 C--AATCTGCGTATCGACCAGGTCGGTGTACCGCGCTCCATCGCCCAGAATCTGACCTTC 619710 Query 429210 CCCGAGCGCGTGACGCCCTT 429229 ||||||| ||||||||||| Sbjct 619709 CCCGAGCTGGTGACGCCCTT 619690 >seq3801 Length=1020888 Score = 109 bits (120), Expect = 9e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 2035570 AGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACCC 2035629 ||||||||||||||||| ||||||||| | ||| | | || ||||| ||| Sbjct 461185 AGCGCACCGACGACATTATGCCGTGGGATGCCGACTTCCTCAAAGTGGACCAGGGCACTT 461126 Query 2035630 TCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGT 2035689 |||| || ||| | | || |||||||| || |||||||| ||| | || | || Sbjct 461125 TCTTCGAACTGACCATGGCGGCCAACTATCTGAACATCAAGGGCCTGCAGGAGCTCACGT 461066 Query 2035690 GCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTA 2035749 ||||||| |||||||| | |||||||||||| | || ||||| ||||| |||||| | Sbjct 461065 GCAAGACTTTGGCCAACATGATCAAGGGCAAGACACCGGAGGAAATCCGATTGACCTTAA 461006 Query 2035750 ACATCAAG 2035757 | |||||| Sbjct 461005 ATATCAAG 460998 Score = 105 bits (116), Expect = 1e-16 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 2035568 CAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCAC 2035627 |||||||| ||||||||| | || ||||| | || | |||| |||| || Sbjct 459501 CAAGCGCATCGACGACATCAAGTCGAGGGACGCCGAATTCCTCAAGGTGGACCGGGAGAC 459442 Query 2035628 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGG 2035687 |||||| || ||||| | || |||||||| || ||||||||| ||| || || | Sbjct 459441 CCTCTTCGAACTGATCATGGCGGCCAACTATCTGGACATCAAGGACCTGCTGGAGCTCAC 459382 Query 2035688 GTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTT 2035747 ||||||| | |||||| || | |||||||||||| | || ||||| ||||| | || ||| Sbjct 459381 GTGCAAGGCTGTGGCCGACATGATCAAGGGCAAGACACCGGAGGAAATCCGAATGATCTT 459322 Query 2035748 TAACATCA 2035755 || |||| Sbjct 459321 CAATATCA 459314 >seq5073 Length=2625208 Score = 98.7 bits (108), Expect = 2e-14 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCG--AGGTCGACCAAC 2035623 || ||||| ||||| |||||||| | |||||| | | ||| | | ||||| || Sbjct 1085512 GAGAAGCGTACCGATGACATTTCCTCTTGGGAC--GCCGATTTCCTGAAAGTCGATCAGG 1085569 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 ||| || || ||| | ||||| || ||||| ||| | ||||| || ||| | ||| Sbjct 1085570 GCACTCTGTTCGAGCTCATCCTAGCGGCCAATTACTTAAACATCCAGGGCCTGTTGGATG 1085629 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 || || ||||| |||||||| | ||||||||||||||||| |||| || ||| | | Sbjct 1085630 TGACCTGTAAGACTGTGGCCAATATGATCAAGGGCAAGTCGCCTCAGGAGATTCGCGACA 1085689 Query 2035744 CCTTTAACATCA 2035755 | |||| ||||| Sbjct 1085690 CGTTTACCATCA 1085701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915661339914500