Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5215 143 2e-29 seq5218 136 3e-27 seq5008 132 3e-26 >seq5215 Length=2160492 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1797524 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1797583 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 1797584 TCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1797643 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | || || ||| || || | ||| ||||| Sbjct 1797644 TGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTT 1797703 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||| || |||||||||||||| Sbjct 1797704 TTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1797296 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1797355 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 1797356 TCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1797415 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | |||||| || | || |||||| Sbjct 1797416 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTC 1797475 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| || ||||||||||| Sbjct 1797476 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | || | || |||| ||||| || |||||| || ||||| || || || Sbjct 1797052 TCCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGA 1797111 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| |||| || || ||||||||||||||||||| || ||||||||| | || Sbjct 1797112 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797171 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||||||||| | || || || ||| | || | || | |||||| Sbjct 1797172 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGAC 1797231 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || || | |||||| || ||||||||||| Sbjct 1797232 CTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 >seq5218 Length=3038582 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||||||||||||||| || ||| | || |||| Sbjct 2718285 CAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATC 2718344 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || ||||| ||| | || | || || ||||| Sbjct 2718345 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 2718404 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | || | ||||| |||| || ||||| Sbjct 2718405 CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGT 2718464 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||||||||||||| || ||||||||||| Sbjct 2718465 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq5008 Length=644625 Score = 132 bits (146), Expect = 3e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| | || ||||| ||||| |||||||| Sbjct 342953 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAA 342894 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || ||||| ||| | || | ||||||||||| | || || |||||| Sbjct 342893 GATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 342834 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || || |||||| || | ||| |||||||| || || |||||||| || Sbjct 342833 CTCGATGGTATCGGAGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 342774 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 342773 GAAGATCTGCATG 342761 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 342745 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 342686 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 342685 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCC 342626 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| || | ||| |||||| Sbjct 342625 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGTGATGGTC 342566 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || || || ||||| Sbjct 342565 TTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 342534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325670968404500