Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5076 86.0 5e-12 seq5008 86.0 5e-12 >seq5076 Length=596799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| | || ||||| ||||| ||| |||| ||| || Sbjct 35090 ATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTCG 35149 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || |||||||| | ||| |||||| Sbjct 35150 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATCAG 35209 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | ||||||||||| Sbjct 35210 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAAC 35269 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || |||| ||||| Sbjct 35270 ATCCAGAAGGAGTCGACCCTGCATCTGGTG 35299 >seq5008 Length=644625 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| | | Sbjct 342762 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCC 342821 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || ||||| || || || ||| | ||| |||||| Sbjct 342822 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 342881 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| || || | ||||||||| Sbjct 342882 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 342941 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || ||||| |||||||| | |||| || || Sbjct 342942 ATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGCGTCTGCGCGGCGG 342988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||||||||| || || || | || ||||| ||||| ||| |||| ||| | Sbjct 342531 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 342590 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| ||| | || || ||||| || || || || | ||| ||| Sbjct 342591 TCCGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGAT 342650 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||||||||||| || || | |||||| Sbjct 342651 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTAC 342710 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || | ||| ||||| Sbjct 342711 AACATCCAGAAGGAGTCCACCCTCCACTTGGTG 342743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398850062789500