Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5218 131 1e-25 seq5215 114 1e-20 >seq5218 Length=3038582 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || | || || || || ||||||||||| || | | ||| || | Sbjct 2718283 CGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCA 2718342 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | |||| | |||||||| || ||||| || |||||| Sbjct 2718343 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 2718402 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | || || || |||| || |||||||| || Sbjct 2718403 TCCTG-AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGAT 2718461 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| ||||| || |||||||| || Sbjct 2718462 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 2718500 >seq5215 Length=2160492 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||| || ||||| ||||| || || || || || ||||| || || | Sbjct 1797508 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1797567 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| ||||| || || || || | ||||| | ||||| || || || Sbjct 1797568 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797627 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| | || |||||| | || | || || || | || || Sbjct 1797628 GATGCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCAC 1797687 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || ||||| ||||| |||||||| ||||| ||||||||||| Sbjct 1797688 CTCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1797738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385193378275500