Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq3194 96.9 1e-15 seq1106 96.9 1e-15 seq1093 93.3 2e-14 >seq3194 Length=20302 Score = 96.9 bits (106), Expect = 1e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 50106 TCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTAC 50165 ||||||||||| ||| ||||||||||| ||||||| |||| |||||||||| |||||||| Sbjct 453 TCTGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTAC 394 Query 50166 CGAACTGCTCTACTCCGC 50183 || |||||| || |||| Sbjct 393 CGGGCTGCTCCACCCCGC 376 >seq1106 Length=55705 Score = 96.9 bits (106), Expect = 1e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 50106 TCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTAC 50165 ||||||||||| ||| ||||||||||| ||||||| |||| |||||||||| |||||||| Sbjct 55253 TCTGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTAC 55312 Query 50166 CGAACTGCTCTACTCCGC 50183 || |||||| || |||| Sbjct 55313 CGGGCTGCTCCACCCCGC 55330 >seq1093 Length=35124 Score = 93.3 bits (102), Expect = 2e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| |||||||||| Sbjct 34840 TGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTACCG 34899 Query 50168 AACTGCTCTACTCCGC 50183 |||||| || |||| Sbjct 34900 GGCTGCTCCACCCCGC 34915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181591339041000