Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_023574.1 Length=128546 Score E Sequences producing significant alignments: (Bits) Value seq1017 260 1e-64 >seq1017 Length=11781 Score = 260 bits (288), Expect = 1e-64 Identities = 1206/1881 (64%), Gaps = 71/1881 (4%) Strand=Plus/Plus Query 67982 AAATTTCGATTTACAACTTTCATGGGTGCTTATAAATTTTACACACAGTATGCTATGCGC 68041 || |||| || | | | ||||||| |||||| || || || | || || || ||| Sbjct 6942 AATTTTCACTTCAAATCATTCATGGCTGCTTACAAGTTCTATGCTCAATACGCAATG--- 6998 Query 68042 ACCACAGATAACAAGTCAATT--CTT-GAACGATATGAAGACCGCATTGCTTTTAATGCC 68098 | || || |||| || || ||| ||| | || ||| || | || | || || Sbjct 6999 AAAACTGACGACAACTCCATGTACTTAGAAGGCTACATAGATCGGACAGCAATGAACGCA 7058 Query 68099 TTAGTTATGGCTGATGGTGACGAACAATTGGCTCTTAACATTGCGCATGAAATGATTTCA 68158 || || | ||| |||||||| || |||| ||| | || | || ||||| | ||| Sbjct 7059 TTGTTTCTAGCTAATGGTGACCAAAAATTAGCTATGAATCTAGCTGATGAATTAATTCAT 7118 Query 68159 CAAACCTATCAACCTGCAACACCAACATTCTCTAATGCTGGTAAGTTGCGTGGTGGTAAT 68218 || | ||||||||| || || || || | || ||||| ||| ||| | ||| | Sbjct 7119 CAGCGTTTTCAACCTGCCACCCCTACTTTTTTGAACGCTGGAAAGAAACGTCGGGGTGA- 7177 Query 68219 GCTG-TATCATGTTTCCTTTTGAATATTGAAGATAATATGACGTCTATTGGGCGCTCAGT 68277 | || | ||||||||| | | | | ||||| |||| | || || | | | Sbjct 7178 GTTGATTTCATGTTTCTTACTTCAGACCACCGATAACATGAATACGATCGGTAGAACCAT 7237 Query 68278 AAATTCAGTTCTTCAATTGTCTAAAATGGGTGGTGGAGTTGGAATCAACTTAACTGATAT 68337 ||||||| ||||||||| || ||||| ||||| ||||||||||| || | || | | Sbjct 7238 TAATTCAGCTCTTCAATTATCCAAAATTGGTGGAGGAGTTGGAATTAATCTTTCTAACCT 7297 Query 68338 CCGTCCGTCAGGAGACCCTATCAAGGGTATTGA-GAATATGGCTGATGGAGTTGTTCCAA 68396 | | | || || || || || ||| | | | | | | ||| ||| ||||| Sbjct 7298 AAGAGCTGCTGGTGATCCCATTAAACACATTCAAGGAGCAGCCAG-TGGTGTTCTTCCAG 7356 Query 68397 TCATGAAACT-CTATGAAGATTCATTTTCA--TATGCCAATCAGTTGGGGACAAGAAATG 68453 | ||||| | ||| |||||| | ||||| ||| |||| || | || |||||| | Sbjct 7357 TAATGAAGTTACTA-GAAGAT--AGTTTCACCTATTCCAACCAACTAGGCCAAAGAAACG 7413 Query 68454 GGGCAGGAGTAACTTATCTCAATGTATTCCATAAAGATATTGTTAAATTCCTCTCTACaa 68513 | || || || |||||| | ||| |||||| || || || ||||| | | Sbjct 7414 GTGCTGGGGTTGTTTATCTTAGTGTTTTCCATCCTGACATCATTCAATTCTTGGGAGTTA 7473 Query 68514 aaaaaGAAAATGCTGACGAAAAAGTTCGTGTTAAAACTCTTTCTCTCGGTGTTGTAGTTC 68573 |||| ||||| || ||||||||| | || || || || ||||| || ||||| || || | Sbjct 7474 AAAAGGAAAACGCCGACGAAAAAATCCGAGTAAACACCCTTTCACTTGGTGTGGTTGTGC 7533 Query 68574 CTGATAAATTCTATGAACTCATTGCTAAAGGTGA--ATCA-ATGTATTTGTTTAGCCCTT 68630 | |||||||| ||||| ||| |||||| ||| || | ||||| | || || || | Sbjct 7534 CAGATAAATTTTATGAGCTC---GCTAAAAATGATGATGATATGTACCTATTCAGTCCAT 7590 Query 68631 ATGATATCTACAATGAGTATGGAAAACTAATGTCTGAAATCAACATCACAGAAATGTATG 68690 ||||| | | |||||||||| | | || | | | || | || || | Sbjct 7591 ATGATGTTGAACGTGAGTATGGAGTTCCCTTCTCATATGTTGATATTTCTAAAGAATACG 7650 Query 68691 ATGAATTAGTTGAAAACAAAAATATC---AAGAAAGATAAAATCTTTGCTCGTGACCTTG 68747 | | | || | ||||| || || |||||| || || |||||||| |||| Sbjct 7651 ACAATATGGTCAAGAACAAGAACATTTCTAAGAAA---AAGATTCGAGCTCGTGAACTTG 7707 Query 68748 AAGAAGAAATGTCTAAACTTATTCAAGAATCAGGATATCCATACATCATCAACATTGATA 68807 || ||||| ||||| |||||||| || ||||||||||| ||||||||||| | Sbjct 7708 AAACCGAAATCGGAAAACTACAACAAGAATCTGGCTATCCATACATTATCAACATTGACA 7767 Query 68808 CAGCAAACCAAGAAAATGCTGTTGACGGTGTAATTAAAATGTCTAACCTTTGCTCTGAAA 68867 | | |||| || ||| | |||||||| ||| ||| ||| || || | |||| Sbjct 7768 CCGTTAACCGTGATAATCCGGTTGACGGCAAGATTGTCATGAGTAATCTGTGTACCGAAA 7827 Query 68868 TCCTTCAAGTACAATCTCCAT-CAGAATTGAACTCAGACCAAACTTATAAGACTATTGGA 68926 | || || || || | || | || |||| || ||||| || | | | ||| Sbjct 7828 TTCTCCAGGTTCAGACACCTTCCATCGTTGACGATGAACAAAACTACGAACAGT-TAGGA 7886 Query 68927 ACTGACGTATCATGTAACCTTGGTTCAACTAA--TATTACACATCTTATGGAGTCATCTG 68984 || || || |||||||| || || || ||||| || | || || |||| ||| | | Sbjct 7887 ACCGATGTCTCATGTAATCTGGGCTCTACTAACGTAGTGAAC--CTCATGGCATCACCAG 7944 Query 68985 ACTTCGGAAGCTCTGTTAGAACAGCAT--TTCGTGCATTAACCTATGTTGCAGATAGCTC 69042 ||||||| | || ||| ||| ||| | || |||||| ||| | ||| ||| Sbjct 7945 ACTTCGGTAAATCAGTT-GAA-GCCATGGTGAAAGCTCTAACCTTCGTTACCGATCACTC 8002 Query 69043 TAACATTGAAGAAGTTCCTACTGTTAAGAACGCCAACGA--TAAGTATCACTCAGTAGGG 69100 ||| | | ||||| | ||||| ||| || || |||| ||||||| | || Sbjct 8003 ATCAATTAACGTGGTTCCATCAGTTAAACACGGAAATGAACTAAG--TCACTCAATTGGT 8060 Query 69101 CTAGGGGCAATGGGACTACATGGATTCCTTGCTAAAAATGGTATTCTCTATGGTTCTCCT 69160 | || || ||||| || ||| || ||||||||||| ||| |||||| || ||| Sbjct 8061 TTGGGAGCCATGGGTCTTCATTCATATTTTGCTAAAAATCATATGTACTATGGCTCACCT 8120 Query 69161 GAATCAATTGAGTTCACAGGTATGTACTTCCAACTCCTAAACTACTGGACTCTATTTGAA 69220 || || ||||| || || ||| ||||| || ||||||||||||| | |||| Sbjct 8121 GAGTCCATTGAATTTACCAGTACCTACTTTATGCTTTTAAACTACTGGACCC----TGAA 8176 Query 69221 AG----TAATCGAATTGCTATTGAGCGCAATCAAGCTTTCTATAACTTTGATAAATCAGA 69276 | ||||| ||| |||| || ||| ||| |||| |||| || || ||| | Sbjct 8177 GGCTTCTAATCAAATGGCTAAGGATCGCGGAAAAGTTTTCCATAATTTCGAAAAAAGTAA 8236 Query 69277 ATATGCCAATGGTAAATACTTCAAACGCTA-TCTACCACGTGTTAAATTTAAAAATAACC 69335 |||||| |||| || ||| | | || |||||| | ||| | ||| Sbjct 8237 ATATGCTGATGGATCTTATTTCGATCAGTACACTACCAAGAGTTGGGCTCCAAA------ 8290 Query 69336 TTTCTGATACAGTCAAAGAATTGTTTAAAGATGTTGATATTCCAACTGCACAAGACTGGG 69395 || |||| ||| ||| | ||||| | | || ||||||||| | | |||||||| Sbjct 8291 -GTCAGATAAAGTAAAATCACTGTTTGATGGCGTCTTTATTCCAACCGAAAAAGACTGGA 8349 Query 69396 TTGACCTACAGGCTTCAATTGAAGAACATGGTCTATATAATTCTTACCGTTTAGCTGTTG 69455 | || | ||| | || ||||||| || || | || | || || | Sbjct 8350 ACGCTTTAAAACAATCAGTCATGGAGTATGGTCTCTACCATCAGAATCGCATGGCCGTAG 8409 Query 69456 CGCCTACAGGTTCAATTTCTTATATCAACGAAGCTACAGCATCTATTCACCCAATTGTAC 69515 | |||| ||||||| | |||| || || || |||||| | | || || ||||| | Sbjct 8410 CTCCTAATGGTTCAACTGCTTACATTGGGGATGCAACAGCAAGTTTGCATCCGATTGTTC 8469 Query 69516 AAAAGATTGAGAAACGCTCAGAGGGTAAACGTGGTGATGTATTCTATCCAGCACCTTATC 69575 |||| ||||| |||| ||| || ||| | | ||| || || || || | Sbjct 8470 AAAAAATTGAAGCACGCCAAGAATCAAAGATTGGAACCATTTACTACCCGGCTCCATACC 8529 Query 69576 TTGCAGAAGGTC----TTCCCTTCTATGAATCAGCCTACAATATTGACCAGCGCCAAATC 69631 || || || | | |||| | ||||||||||||||| | | |||| ||| || | Sbjct 8530 TTTCA-AATGACACCATTCCTTACTATGAATCAGCCTATGACACTGACATGCGTAAAGTA 8588 Query 69632 ATTGACGTCTACGCAGAAGCGCAAAAACATGTTGACCAAGCTCTTTCTATGACACTCTTC 69691 ||||| || ||||| | || ||||| || ||||| |||| | | | || ||||| Sbjct 8589 ATTGATGTTTACGCTGCCGCTCAAAAGCACGTTGATCAAGGAATGAGTTTAACCCTCTTT 8648 Query 69692 ATGAATGCAGACCA-CGGAAAAGATTTGTATGAGTGGAAAATTGGAACAAGTGGTGAAGA 69750 ||| | || |||| ||| | | | ||||| |||||| ||| | |||| || Sbjct 8649 ATGCGTTCA-ACCATTCCAAAGGGTCTTTATGAATGGAAAGATGGTAGAAGT------GA 8701 Query 69751 CTCATTCACTACACGTGATATCAATATCTTGCGTAACTATGCATGGTCTAAAGGTATTAA 69810 | | | | || | ||| | | ||| | || || ||||| | ||||| ||||| Sbjct 8702 CAAAATGTCAACCAGAGATTTAACGATCCTTCGAAATTATGCTTACAAAAAAGGCATTAA 8761 Query 69811 ATCAATCTATTACGTTCGCAC 69831 |||| |||||||||| || || Sbjct 8762 ATCACTCTATTACGTGCGAAC 8782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411194835248500