Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5354 192 4e-43 seq1253 150 1e-30 seq5059 111 1e-18 >seq5354 Length=5555046 Score = 192 bits (212), Expect = 4e-43 Identities = 684/1059 (65%), Gaps = 15/1059 (1%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || ||||| || ||||||||||| ||||| || || ||||| ||||||| || || Sbjct 1169000 GGCGGTAACATTGAGGATACCATTGGCGTCCAAGTCGAAGGTGACGTCAATTTTTGGCAC 1169059 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||||| | ||||||||||| || || || ||||| ||||| || || || || Sbjct 1169060 GCCTCTGGGTGCAGGTGGGATGCCGGTCAGGTTGAATGTGCCCAGCACGTTGTTGTCCTT 1169119 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 ||| | || || |||||||||| || ||||| || ||| || ||||| | || Sbjct 1169120 AGTCAGAGCACGCTCGCCCTCGAAAACCTGTATAGTCACCGCAGGCTGGTTATCGGCGTA 1169179 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||||| ||| | |||||| ||| |||||||| |||| | || || | ||||| Sbjct 1169180 GGTTGTGAATGTTTTGGATTGTTTGCAAGGAATGCGGCTGTTGCGCTCGATTAGCTTGGT 1169239 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | |||||||| || || | || || || || |||| ||||| || || | | Sbjct 1169240 CATCACTCCACCAGCAGTCTCGATGCCCAGTGATAGCGGAGCCACATCCACCAGTAAGAC 1169299 Query 281725 AT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || || | | | || | | || |||||||||||| || ||||| || |||| Sbjct 1169300 ATCCTTTATCTGGCTGCTCTCGTCG-CCGGAAAGAATAGCTGCCTGTATAGCCGCTCCAT 1169358 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 281843 | || || |||||||||||||| | | |||||| | || || || || Sbjct 1169359 AGGCCACCGCTTCATCAGGATTGATGGACAGATTTAGGGTCTTTCCGCCAAAGAAGCCCT 1169418 Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 ||||| | | ||||| || || || | |||||||| || || ||||| ||||| | Sbjct 1169419 GCAGAAGATTTTGAACCTTGGGGATGCGGGTGGATCCTCCTACCAAGACAATGTCATGAA 1169478 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 |||| ||| |||| || | |||| || | ||||| ||||| || || | | Sbjct 1169479 TCTGTCCTTTGTCCATCTTGGCATCCTTTAGGGCCTTTTCCACGGGCTCCAGGGTATTGC 1169538 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAA 282023 || | ||| || | || ||||| |||| | | || | | | || Sbjct 1169539 GGAAGAGGTCGCCGCACAACTCCTCGAAACGGGCTCGGCTCACCTTGGTGTAAAAGTCGT 1169598 Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAG--TTTGAGTCGAAGAAGATAGTGCACG 282081 || ||||||| | ||||| ||||| | || | || | | || | | |||| || Sbjct 1169599 GACCCTCGAACAGGGCATCAATCTCAATGGAAGCCTCTGTGCTGGAGGACAAAGTG--CG 1169656 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAA 282139 || || ||||| ||| || | || | || | || | ||||| | || | Sbjct 1169657 CTTGGCGCGTTCGGCTGCAGTTCGAAGGCGTCTCAGAGC--GCGAGGATTGGTGCGCAGA 1169714 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCAAA 282198 || | ||| | || | ||| || || || | || ||| || || || || ||||| Sbjct 1169715 TCCTTCTTAAACTTGCGCTTAAACTCCTCTGC-CAGATGGTTCACCAGTCGGTTGTCAAA 1169773 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATC 282255 || || || |||| | ||| | || | ||| | | || | |||||| ||| || Sbjct 1169774 GTCCTCGCCACCCAGATGAGTGTCGCCGGCCGTGGACCGCACCTCGAAAAGAGATCCTTC 1169833 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | | ||||| | | ||||| || || || |||| ||||| || || ||||| Sbjct 1169834 GTCGATGGTCAAAATACTGACATCGAAAGTGCCGCCGCCCAAGTCAAAGATGAGCACATT 1169893 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 ||| | | || || || || ||||| || | ||| || ||||| || || || Sbjct 1169894 GCGCTCTCCCTTAAGATTCTTGTCGAGTCCATAGGCCAGAGCTGCGGCAGTGGGCTCGTT 1169953 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 ||||| | | ||||| | || || || ||| ||||| || ||||| || | || Sbjct 1169954 GATAATACGAAGGACATTTAATCCGGCGATGGCTCCGGCATCCTTGGTGGCCTGGCGCTG 1170013 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 || ||||| || || ||||| || ||||| || ||||| Sbjct 1170014 GGAGTCGTTGAAGTAGGCAGGCACCGTAATGACTGCATC 1170052 >seq1253 Length=3799 Score = 150 bits (166), Expect = 1e-30 Identities = 179/236 (76%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAA-AGAGTAACATCATGGGTTCCACCACCCAT 282297 |||||||| | |||||| | | | ||| | || ||||||| || || ||||| | Sbjct 3606 ACTTGGAAGACTCCATCCCCTA-ATTCAAGGACAGAAACATCAAAAGTACCTCCACCTAA 3548 Query 282298 ATCAAAAA-TAAG-TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAA 282355 |||| ||| |||| | ||||| ||||||||| ||||||| | |||||| |||| Sbjct 3547 ATCATAAACTAAGATTTTTTCAT--CTTTGTCTT---TTTTATCTAAACCATATGCAAGT 3493 Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 | ||| ||||| ||||||||||||||||| ||||| ||| || |||||| | || ||| Sbjct 3492 GAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTCCGGCAATTTTACCGGCA 3433 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||||| || ||||| | ||| | ||| ||||| || ||||||||||||||||| || Sbjct 3432 TCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAACAGTAATAACTGC 3377 Score = 107 bits (118), Expect = 1e-17 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||||||| |||||||| | |||||||| ||||||||||| ||| | |||||| | | Sbjct 3509 CTAAACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTC 3450 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | ||||||||| | | ||| || ||||| | || || |||||||| || || || | Sbjct 3449 CGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAA 3390 Query 86234 CAGTAATAACTGCTTTATTAATAG 86257 ||||||||||||||| | ||| || Sbjct 3389 CAGTAATAACTGCTTGACTAACAG 3366 >seq5059 Length=3196756 Score = 111 bits (122), Expect = 1e-18 Identities = 448/703 (64%), Gaps = 2/703 (0%) Strand=Plus/Plus Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 || || ||||| || ||||| || || |||||||| | || | || | || | | | Sbjct 736822 GTGACTAGACGGTTGTCAAAGTCCTCGCCTCCCAAATGGGTGTCACCGGCAGTGGATTTG 736881 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 || | ||| | || || || | |||| || | ||||| ||| || || |||| | Sbjct 736882 ACCTCGAAGATGCCGTCATCGATCGACAGAATGGACACATCGAAGGTGCCGCCGCCCAGA 736941 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || || || || || || || | || || || ||||| || |||| ||| Sbjct 736942 TCGAAGATGAGCACGTTGCGCTCGCCAACGGCCTTCTTGTCCAGACCGTAGGCAATGGCA 737001 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || || || || || || || || | || |||||| | || ||||| | || || || Sbjct 737002 GCGGCCGTGGGCTCGTTGATGATACGCAGAACATTCAATCCGGCAATGGTACCGGCGTCC 737061 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | || || ||||| || || || || ||||| || ||||| | || Sbjct 737062 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAAGCTGGCACAGTGATGACGGCGTTGGTC 737121 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || || || | || || || || | ||||| || | | | ||| || || Sbjct 737122 ACAGTCTTGCCCAGGTAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGGACCATCGAGGAG 737181 Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597 || | || || ||| | | ||| |||| | || | || || | | || || Sbjct 737182 ATCTCCTCAGG-GAAGAAGGTCTTCTTCTCATCCTTGTAGGTGACCTCGATCTTGGGCTT 737240 Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTC 282657 |||| | | ||| | || ||||| | ||||| || || || ||| || Sbjct 737241 GCCGTCAACGCTGACAACCTCGAAGGGCCAGTGCTTCATGTCGGACTGCACAGCAGAATC 737300 Query 282658 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC 282717 | || | | ||||| | || || ||||| || || || | ||| || || | || Sbjct 737301 GTCGAACTTGCGGCCAATGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGC 737360 Query 282718 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 282777 | || | ||||| ||||| || |||||| | || || || || || | |||||| || Sbjct 737361 CACCTGGTTCTTGGCAGCATCGCCGATCAGACGCTCGGTGTCGGTGAAGGCAACATAGGA 737420 Query 282778 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 282837 ||| || || |||||||| ||||| || ||||| || ||||| || |||| || | || Sbjct 737421 TGGTGTGGTACGATTACCCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACAC 737480 Query 282838 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 || || || | || || || ||||||||||||| |||| Sbjct 737481 TCCCACGCAGGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 737523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740360373243000