Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq995 295 2e-74 seq1017 105 2e-17 seq1229 84.2 7e-11 >seq995 Length=30878 Score = 295 bits (326), Expect = 2e-74 Identities = 656/977 (67%), Gaps = 16/977 (2%) Strand=Plus/Plus Query 69092 ACGTATTTGATTATGAAGATATTCAATTGGTACCAGCAAAGTGTATAGTTGAGAGCCGTT 69151 |||| |||||||| |||||||||||| || | || |||||| | ||| | || Sbjct 5355 ACGTGTTTGATTACGAAGATATTCAACTGATTCCGAATAAGTGTGTGGTTAACTCTCGAA 5414 Query 69152 CCGAGTGTGATACATCTATT-AGTTTAGGGAATCGAAAATTTAAATTACCAGTAGTTCCA 69210 ||| ||||| || || || ||||| ||| || || || || | || || || ||| Sbjct 5415 GCGAATGTGACACTTCGGTTGAGTTTGGGGGC-CGTAAGTTCAAGATCCCGGTCGTACCA 5473 Query 69211 TCTAATATGCAAACGATTATTGATGAGAAAATAGCTGCTTATTTAGCNNNNNNNGGCTAT 69270 |||| ||||||||| | ||| | | | |||| | | | || || || Sbjct 5474 GCTAACATGCAAACGGTGATTAACGCTGACCTAGCCGAGAGTCTCGCTAAAAATGGTTAC 5533 Query 69271 TTCTATGTAATGCATAGATTTGAACCCGAGACTAGACTTGATTTTATTAAAGATATGCAA 69330 ||||| || ||||| | ||| |||| || | | ||||||||| | ||| | ||||| Sbjct 5534 TTCTACGTCATGCACCGTTTTCAACCAGAAAAACGCCTTGATTTTGTGAAAAAAATGCAT 5593 Query 69331 -AC--TCGCAACTTATATGCTTCTATTAGTGTTGGTGTAAAAGAAGAAGAGTATCAATTT 69387 || | | ||| ||| || || ||| | || || || | || || | || Sbjct 5594 GACGATGGGG---TATTTGCCTCCATCAGTATCGGGGTTAAGCCCAACGAATACGATTTC 5650 Query 69388 ATTAATCAATTAGCTGATGAAAAACTTGTTCCAGAATATATCACTATTGATATAGCTCAC 69447 ||||| || | | | | | | |||||||||| ||||| ||||| || || ||| Sbjct 5651 ATTAAGGAACTGGTCCAAGCCGACCAAATTCCAGAATACATCACGATTGACATTGCCCAC 5710 Query 69448 GGACATTCTAATGCTGTTATTAAAATGATTCAA--CATATAAAGAA--GATGTTACCAAA 69503 || | || | | || || || |||||| | | | ||| ||| |||| || || Sbjct 5711 GGTTACTCGGACTCGGTCATCAACATGATTAAGTTCGT-TAAGGAACGGATG---CCCAA 5766 Query 69504 TAGTTTTGTTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGAACTTGAAAATGC 69563 | |||| | |||||||| || ||||| || || ||||| ||||| | |||||||||||| Sbjct 5767 CACTTTTCTGATTGCTGGAAACGTTGGAACCCCAGAAGCCGTTCGGGCACTTGAAAATGC 5826 Query 69564 AGGCGCAGATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTATTACTAAAATCAA 69623 || || || || || || || || ||||| || || || | || || ||||| || || Sbjct 5827 GGGTGCGGACGCCACCAAGGTCGGAATTGGACCCGGAAAGGCCTGCATCACTAAGATTAA 5886 Query 69624 AACTGGTTTTGGTACTGGCGGCTGGCAGTTAGCTGCATTGCGTTGGTGTTCAAAAGTAGC 69683 || |||||||| || || || ||||| ||||||| | || | ||| | |||| ||| Sbjct 5887 GACCGGTTTTGGAACCGGGGGATGGCAACTAGCTGCCATTCGCTATTGTGCGAAAGGAGC 5946 Query 69684 TACTAAACCAATAATTGCTGATGGTGGTATTCGTACTAACGGTGATATTGCTAAATCTGT 69743 | ||||| || || ||||| || || ||||| || | ||||| || || ||||| | Sbjct 5947 CAGAAAACCCATCATCGCTGACGGAGGGATTCGGACCGATGGTGACATCGCGAAATCGAT 6006 Query 69744 ACGTTTTGGCGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGTCACGAGGAATCACC 69803 || ||||| ||| ||||| ||||| || ||| | |||||||| || | || || || Sbjct 6007 TCGCTTTGGTGCTACAATGTGCATGATCGGATCGATGTTTGCGGGCCATCAAGAGTCTCC 6066 Query 69804 AGGTGAGACGATAGaaaaaaaTGGTAAATTATATAAAGAGTATTTTGGATCCGCTTCTGA 69863 ||| | | |||||||| |||| || ||| ||||| || ||||| || || || | Sbjct 6067 GGGTCAAAAAGTAGAAAAAGATGGGAAGGAATACAAAGAATACTTTGGTTCTGCATCCCA 6126 Query 69864 ATATCAAAAGGGTGAAAAGAAGAACGTTGAAGGAAAGAAGATACATGTAGAATGTAAAGG 69923 || ||||||||||| | || ||||| || ||||||||| | || | || || Sbjct 6127 ATTTCAAAAGGGTGCCTACAAAAACGTGGAGGGAAAGAAGTTGTTAGTTCCTTTCAAGGG 6186 Query 69924 GAGTTTGAAAGATACGTTGATTGAAATGGAACAAGATCTTCAATCTTCAATTTCTTATGC 69983 || | | || || || ||| ||| || | || || || || ||||| || || || Sbjct 6187 CAGCATCTATGACACTCTGCGTGAGATGCAAGAGGACCTGCAGTCATCAATCTCATACGC 6246 Query 69984 TGGTGGTAAAGATTTATTAGCAATTAGAAATGTAGATTATGTCGTTGTTAAGAACTCCAT 70043 |||||| |||||| | || || | || || || || || || ||||| || || || Sbjct 6247 TGGTGGAAAAGATATCGACGCCATCCGGAAGGTTGACTACGTGGTCGTTAAAAATTCAAT 6306 Query 70044 TTTCAATGGAGATAAAA 70060 || ||||| ||| ||| Sbjct 6307 TTATAATGGTGATTAAA 6323 >seq1017 Length=11781 Score = 105 bits (116), Expect = 2e-17 Identities = 247/370 (67%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 54156 CAACCAGCTACTCCAACTTTCCTAAATGCTGGTA-GAAGCAGACGCGGAGAAATGGTTTC 54214 ||||| || || || ||||| | || ||||| | ||| | | || || || || |||| Sbjct 7128 CAACCTGCCACCCCTACTTTTTTGAACGCTGGAAAGAAAC-GTCGGGGTGAGTTGATTTC 7186 Query 54215 TTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATACTGC 54274 ||||||||| | | | |||| | ||||| | || ||| | || ||| | || Sbjct 7187 ATGTTTCTTACTTCAGACCACCGATAACATGAATACGATCGGTAGAACCATTAATTCAGC 7246 Query 54275 AATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAG 54334 | |||||||| |||||||| || || |||| | || |||||||| || |||| Sbjct 7247 TCTTCAATTATCCAAAATTGGTGGAGGAGTTGGAATTAATCTTTCTAACCTAAGAGCTGC 7306 Query 54335 AAAAGAGCAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACT 54394 || | |||||| ||| | | || || ||| || | ||||| ||||| | Sbjct 7307 TGGTGATCCCATTAAACACATTCAAGGAGCAGCCAGTGGTGTTCTTCCAGTAATGAAGTT 7366 Query 54395 TTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGT 54454 |||||||||| ||| | ||| | || || || ||||||||||| || ||||| | ||| Sbjct 7367 ACTAGAAGATAGTTTCACCTATTCCAACCAACTAGGCCAAAGAAACGGTGCTGGGGTTGT 7426 Query 54455 TTACTTAAACATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGC 54514 ||| | | | ||||| || || ||| ||||||| | ||||||| || || Sbjct 7427 TTATCTTAGTGTTTTCCATCCTGACATCATTCAATTCTTGGGAGTTAAAAAGGAAAACGC 7486 Query 54515 TGATGAAAAA 54524 || |||||| Sbjct 7487 CGACGAAAAA 7496 >seq1229 Length=10170 Score = 84.2 bits (92), Expect = 7e-11 Identities = 114/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 206944 AATAAAGGTAATGTGAAAGCTCGTATGAGAATGATAGCTCAATATGCTATTGGCGGAGCG 207003 ||||| ||||| | || ||||| | |||||||| ||||| | | | |||| ||| || Sbjct 9971 AATAAGGGTAACATTAAGGCTCGGACTAGAATGATTGCTCAGTTTACGATTGCCGGTGCT 9912 Query 207004 AAAAATCTATTAGTAATTGGAACAGATCATGCTGCAGAAGCTATAACTGGTTTCTATACA 207063 || | | | || ||||||| ||||||||||| || || | ||||| || ||||| Sbjct 9911 AATCAAGGAATTGTCCTTGGAACTGATCATGCTGCCGAGGCGGTGACTGGATTTTATACC 9852 Query 207064 AAATTTGGAGACAATGGAG---TAGATATTTTACCTAT 207098 |||||||| | |||||| ||||||| | ||||| Sbjct 9851 AAATTTGGGG---ATGGAGCTTCAGATATTGTTCCTAT 9817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591798220064000