Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5218 158 2e-33 seq5213 86.0 1e-11 >seq5218 Length=3038582 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||| ||||| || ||||| || ||||| ||||| || | | || Sbjct 2718283 CGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCA 2718342 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| ||||| || | || ||||||||||| |||||||| || Sbjct 2718343 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 2718402 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || ||||| ||||| || || | ||| || Sbjct 2718403 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 2718462 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 2718463 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq5213 Length=770604 Score = 86.0 bits (94), Expect = 1e-11 Identities = 182/264 (69%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 198339 CTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGA 198398 || |||||| | | ||| |||| | || | || || |||||||| | || | | Sbjct 538370 CTGTGGAATTCGGCTCAACTACAACTAGTACGTGAGGGCAAAATGCACGGCTTCCTGCGC 538429 Query 198399 ATGTACTGGGCTAAAAAGATACTTGAATGGA-CAAGAACACCGGAAGACG-CTTTGAGTT 198456 |||||||||||||||||||| || || |||| | || || || || | | | | |||| Sbjct 538430 ATGTACTGGGCTAAAAAGATCCTCGAGTGGAGCGAG-ACTCCTGAGCAGGCCCTGGAGTA 538488 Query 198457 ATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTA 198515 |||| || || |||||||| || ||||| ||| || || || || || || Sbjct 538489 CGCCATTCTA-CTTAATGATAAGTACAGTCTGGACGG-ACGAGACCCCAATGGTTATGTG 538546 Query 198516 GGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTT 198575 || || |||||||| || | ||| | ||||| | ||||| ||| || |||| ||| Sbjct 538547 GGGTGCATGTGGTCCATCGGGGGAATCCATGACATGGGATGGAAGGAACGATCTATCTTT 538606 Query 198576 GGGAAGATAAGATATATGAATTAT 198599 || |||||| | || ||||| ||| Sbjct 538607 GGAAAGATACGCTACATGAACTAT 538630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981758011864500