Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5213 89.7 9e-13 >seq5213 Length=770604 Score = 89.7 bits (98), Expect = 9e-13 Identities = 183/264 (69%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 183022 CTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGA 183081 || |||||| | | ||| |||| | | | || || |||||||| | || | || Sbjct 538370 CTGTGGAATTCGGCTCAACTACAACTAGTACGTGAGGGCAAAATGCACGGCTTCCTGCGC 538429 Query 183082 ATGTACTGGGCTAAAAAGATACTTGAATGGA-CAAGAACTCCGGAAGATGCTTTGAGTTA 183140 |||||||||||||||||||| || || |||| | ||| |||| || | || || || Sbjct 538430 ATGTACTGGGCTAAAAAGATCCTCGAGTGGAGCGAGA-CTCCTGAGCAGGCCCTGGAGTA 538488 Query 183141 TAGTATCTATA-TGAACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGATACGTA 183198 || | || | || |||||||| || ||||| ||| || || || || || || Sbjct 538489 CGCCAT-TCTACTTAATGATAAGTACAGTCTGGACGG-ACGAGACCCCAATGGTTATGTG 538546 Query 183199 GGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTT 183258 || || |||||||| || | ||| | || || | | ||||| ||| || |||| ||| Sbjct 538547 GGGTGCATGTGGTCCATCGGGGGAATCCATGACATGGGATGGAAGGAACGATCTATCTTT 538606 Query 183259 GGAAAGATAAGATATATGAATTAT 183282 ||||||||| | || ||||| ||| Sbjct 538607 GGAAAGATACGCTACATGAACTAT 538630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903349090480000