Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5218 134 3e-26 >seq5218 Length=3038582 Score = 134 bits (148), Expect = 3e-26 Identities = 283/416 (68%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 110674 CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733 |||| | ||| || ||||| ||| | |||||||| ||| || ||| ||||||| ||| Sbjct 2801435 CTTCCAATGGTCTGGTTCCTATGCTGAGAGTCTTTAACAACGTGGCACGATATGTGGATC 2801494 Query 110734 AAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790 | |||||| ||| | || | ||||| || ||||| || || |||||||| ||| Sbjct 2801495 AGGGTGGTGGCAAGCGGCCGGGAGCCTTTGCCATTTATCTAGAGCCCTGGCATTCGGATG 2801554 Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | ||||| || | || ||| || ||| || ||||| || |||| ||||||| Sbjct 2801555 TTTTTGAGTTTCTGGACCTTAAGAAGAATACTGGCAAGGAAGAGCATCGAGCCCGTGATT 2801614 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGT 110910 | || ||||| ||||||| ||||| | ||||||||||| || | | |||| | Sbjct 2801615 TGTTCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGGCCAATGAGGACT 2801674 Query 110911 GGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTG 110970 |||| ||| | ||||| || | ||||| || |||||| | || | ||||||| Sbjct 2801675 GGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGGGGCGATGAGTTTG 2801734 Query 110971 AAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC--AAATTCCAGCTCA 111028 || | || || | ||||| | || || ||| | | ||||||| || | | || Sbjct 2801735 AAAAGCTATATGTGAAATACG-AACAGGAGGGACG---CGCAAACCGAACTGTAAAAGCA 2801790 Query 111029 -AGAACTT-TGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATAT 111082 || ||| |||||| ||| |||| || ||||| || ||||| | |||||| || Sbjct 2801791 CAGTCCTTGTGGTTCGCCATCATTGAGTCGCAAGTGGAGACTGGCAATCCTTACAT 2801846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186729166785500