Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5215 93.3 1e-13 seq5218 87.8 4e-12 >seq5215 Length=2160492 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || |||||||| ||||| ||||| ||||| Sbjct 1797738 AAAATG---CAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAG 1797682 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 || || || |||| || ||||| || ||| ||||| || || || || || Sbjct 1797681 CCCTCCGATACCATCGAGAACGTCAAAGCCAA-GATCCAAGACAAGGAGGGCATCCCCCC 1797623 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 ||| || | | |||||||||||||||||| | || ||||| | || | |||| Sbjct 1797622 AGACCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGA 1797563 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||| ||||||| ||||| || |||||| Sbjct 1797562 CTACAACATCCAGAAGGAGTCGACCCTTCAC 1797532 >seq5218 Length=3038582 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| || || || ||||| Sbjct 2718482 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGATACCATCGAAAAT 2718423 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 2718422 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 2718364 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 2718363 CGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAACATTCAGAAGGAGTC 2718304 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | || || | ||||| Sbjct 2718303 TACCTTGCACTTGGTGCTGCGCCTTCG 2718277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181737518565500