Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5218 246 3e-60 seq5017 107 2e-18 seq5008 100 3e-16 seq5215 95.1 1e-14 seq5076 86.0 6e-12 >seq5218 Length=3038582 Score = 246 bits (272), Expect = 3e-60 Identities = 706/1068 (66%), Gaps = 17/1068 (2%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || || ||||||||||| || ||||| || ||||| || ||| | ||| |||| Sbjct 2802866 GCAGCTGGCTTTGTGCGCAAGTAGTACATTCCGGTTTTAAGACCAGCTTTCCAGGAGTAG 2802807 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 || || || || | | | || | ||||| ||||| | ||| || || ||| Sbjct 2802806 AAATGTATGGATGTGAGCTTTCCATAGTTTGGCTCTGCCACATGGATATTGAAGGACTGG 2802747 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC-AT 146750 || |||||||| || || ||| || || ||||| | ||| | | ||| || || Sbjct 2802746 CTCTGATCTATAAACGCACCGCGATCTGCGGCCATTTTAATTGTT-GATTTAACTGAGAT 2802688 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 ||||||| | |||||||| || | || | | |||||| |||||| |||||||| Sbjct 2802687 TTCCCAAACTGTTTTGTAAAGGTCTCGGACCTTTTGTGGAATTGATTCAATATTTTGAAT 2802628 Query 146811 AGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTTA 146868 || ||| || | | || || ||| | || || ||| | | | || | Sbjct 2802627 GGATCCCCTGCTGGATATGATC-TGATTCTTCATGTCAT-CGTCCCACAAATCCAGCTCC 2802570 Query 146869 ATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTG 146928 | | || | |||| || ||||||||||| |||||||| | || || ||||| Sbjct 2802569 GTCAAATCCCTCAGCAAATGATGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCTT 2802510 Query 146929 AGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTG 146988 ||| | ||| | || | ||||| || || || ||||| || | ||||| || || Sbjct 2802509 GTATAAATATTTGTTGTATAGGGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTC 2802450 Query 146989 GTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTG 147048 | ||| || ||||| |||||||| | || |||| | || | |||| Sbjct 2802449 GATGCTGTGGGCATCGGAGCCACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGAC 2802390 Query 147049 TCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGG 147108 ||||||| | || ||||||||| | | ||||| | ||||||||||||||| Sbjct 2802389 TCCTTCAGACCTTTCCAGTCCCAAAGATCTGTCGGCGTTTTATCCCACATGTCGTACTGC 2802330 Query 147109 AGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCC 147168 || | ||| |||| | ||||| || | | || ||| | ||||| | || ||| Sbjct 2802329 AGAATTCCCTTACTGACCGGACTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCC 2802270 Query 147169 AATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG 147228 | ||| || || || || || |||||| |||| |||||||| ||| |||| ||||| | Sbjct 2802269 AGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAG 2802210 Query 147229 ACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCC 147288 | | | || || ||||| ||||| || ||||| ||| | | || || |||| |||| Sbjct 2802209 AGGCTGGCCTCCTCGCTTTCGTAGGGATAACGCATAAGAATCAGCGCGTCAGCCAGACCC 2802150 Query 147289 TGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTC--GCTATGG 147346 || | |||| ||| ||||| |||||| || ||| ||| || ||| || ||| Sbjct 2802149 TGAACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCTTGGC-CTCCGGCAGTGG 2802091 Query 147347 GATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTT 147406 | || ||| ||| || ||||| |||||||| | | || || || | | Sbjct 2802090 G-TAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCCT 2802032 Query 147407 TGAGTTTCTCGAAATCATAAGTCCCGTCT-TCGACACGTACGCATTGGTTCACGGCGATA 147465 | || || | ||| ||||| || ||| || ||| | ||| ||| | ||||| Sbjct 2802031 TAAGCTTTTTGAAGTCATATGTTTTCTCTGGCGTCAC--AAACAT--GTTGAGAGCGATC 2801976 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 || |||| |||||| || || |||| || |||| | ||||| || ||||| | ||| Sbjct 2801975 GATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAG-AGTACTCGACAATTTCCGTGCA 2801917 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 ||| || |||||||| ||| |||| || || || ||||| || || ||||||||||| Sbjct 2801916 CAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTC 2801857 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 |||||||||||||| || ||| ||||| ||||||| |||| ||| Sbjct 2801856 CTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGAT 2801809 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| ||||| || | | | ||||| || |||||||| ||||| | ||| Sbjct 2718276 ACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 2718335 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| || || | |||| |||||||| ||||||||||| || || Sbjct 2718336 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 2718395 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | ||||| | ||| || || || | Sbjct 2718396 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAG 2718455 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 2718456 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 |||||||| | || | |||||||| || || || || || | || |||||||| ||| Sbjct 2801201 TACGTCTCCACGGCAGCATCGATGTCTTCTCCATGGATTCCGATTGCCACGCGCATAAGC 2801142 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 |||||||| ||||| ||||| | || | ||||| || || || || | || || Sbjct 2801141 ATGTGCTGGGGTCGCTCGGCGATTTTACCATTGATTTTAAGGAGGTACGAACGCTCCAGA 2801082 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 || ||| | |||||||| |||||| |||| || Sbjct 2801081 GTCTTGAATCCAAAGTAGTTGTAACCAAAGTC 2801050 >seq5017 Length=1730897 Score = 107 bits (118), Expect = 2e-18 Identities = 205/300 (68%), Gaps = 3/300 (1%) Strand=Plus/Plus Query 51579 TTGCCCGTGGTCTTGCTCAGCGGATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGA 51638 ||||| |||| |||||||||| || || ||| | ||||||| | ||||| Sbjct 722712 TTGCCAGTGGACTTGCTCAGCTCGTGTCCGCCCTTGCCCAAATCGTCGGCATCGGCGTGG 722771 Query 51639 ACCACCAGACTGCGGCCAACGACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATC 51698 || |||| | | || |||| || ||||| | ||||| || || ||| |||| | Sbjct 722772 ACGACCACAGTACGTCCAATGATGCTATCGGCACCGAACAGAGTGATCTTAGAGTCGCTG 722831 Query 51699 TTGTCCACTTCGGTGAGGGCGTTGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACG 51758 || || | |||| |||| | | || | |||||| | || ||||| ||||| | | Sbjct 722832 ATGGTGACCTTGGTG-GGGCAATCGCCAGT--AGCCTCAATGTTTCCCAAATCGCCCAAG 722888 Query 51759 TGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCC 51818 ||||| || | || || || ||||| || ||||| |||||||| || || Sbjct 722889 TGGCGGTTCTCATCGCCAGGGGCACCGTGCTCCTTGCCGTGTGGGTTGAAATGAGGACCA 722948 Query 51819 GCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 | ||| ||||||||||| || |||| || || |||||||| ||||| |||||||| ||| Sbjct 722949 GAGGACATGCAGCCGTTGGTGTTGTCACCAAACTCGTGCACATGGAAGCCGTGCAGACCC 723008 >seq5008 Length=644625 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||||||| | | ||||| || || |||||||||||| || ||| Sbjct 342982 CGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 342923 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| |||||||| |||||||| || ||||| Sbjct 342922 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCC 342863 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | ||||||| ||||| || || | Sbjct 342862 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGG 342803 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || |||||||| || || | ||| ||||||||| || Sbjct 342802 GTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCT 342758 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || ||| || || || Sbjct 342742 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 342683 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| |||||||| |||||||| || || || || || || Sbjct 342682 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGG 342623 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||||||| ||||| || |||| || | || || Sbjct 342622 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGTGATGGTCTTG 342563 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | |||||| ||||| Sbjct 342562 CCAGTCAGGGTCTTCACGAAAATTTGCAT 342534 >seq5215 Length=2160492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || |||||||||||| | ||| Sbjct 1797514 ACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1797573 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || |||| |||| | |||||| || ||||| || ||||| Sbjct 1797574 GCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCC 1797633 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || ||| | | || | ||||||| |||||||| || | Sbjct 1797634 CTCCTTGTCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAA 1797693 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| ||||| | || |||||||| Sbjct 1797694 GGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || |||||||||||| | ||| Sbjct 1797286 ACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1797345 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || |||| |||| | |||||| || ||||| || ||||| Sbjct 1797346 GCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCC 1797405 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || |||| ||||| || || | Sbjct 1797406 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAG 1797465 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || |||||||||| || || | ||| |||||||| Sbjct 1797466 AGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 >seq5076 Length=596799 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | | ||||| || || ||||||||||| | ||| || ||| || Sbjct 35298 ACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCC 35239 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| |||||||| ||||| || || || |||||||| || Sbjct 35238 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTTGTCCTGG 35179 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || || | ||||| || |||| || | || || Sbjct 35178 ATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGATGGTCTTG 35119 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||| || |||||| Sbjct 35118 CCAGTGAGGGTTTTCACGAAGATTTGCATG 35089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578432980000