Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5200 176 5e-39 >seq5200 Length=2197361 Score = 176 bits (194), Expect = 5e-39 Identities = 347/504 (69%), Gaps = 26/504 (5%) Strand=Plus/Minus Query 146842 AAATCGTCTATGTCCTCCACCCGCC--TCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGT 146899 ||||| || ||||||| |||| | | | || | || |||||||||||||| || || | Sbjct 1469506 AAATCTTCAATGTCCTGCACCTGGCGTTTAATAACT--AGCTTGGGGAAGGGACGCGGCT 1469449 Query 146900 TCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCA 146959 | | || || | || ||||||||||| || ||||| || |||| ||| |||| Sbjct 1469448 CGCGTTCGAGTTGCTCCTGAAGTGGCTCCACGTGATTTAGGTAAACATGCGTGTCTCCCA 1469389 Query 146960 GGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCA 147019 |||||| |||||||| || ||||| || || || || || || | ||| ||||| | || Sbjct 1469388 TGGTGTGAACAAAGTCACCAGGCTTCAGACCAGTGACATGAGCAATCATATAGGTCAACA 1469329 Query 147020 GCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTC--TGGTA 147077 | | |||| ||| ||||||||||| || |||| ||||||||| | || || || || Sbjct 1469328 GGGCGTAGGAGGCAATGTTGAAGGGCACTCCCAAGCCCATGTCGGC--ACTTCGTTGATA 1469271 Query 147078 CAGCTGGCACGAGAGCTC------CCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCA 147131 ||||||||| ||||| || | | | | || |||||||| || | |||||| Sbjct 1469270 CAGCTGGCAGGAGAGTTCGCCACGCTCCTGAGAGACATAAAACTGAGCCAAGCAGTGGCA 1469211 Query 147132 CGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCT 147191 ||| |||| ||||| || | |||| || ||||| ||||| | | | || | Sbjct 1469210 CGGGGGCAATGCCATCTTTGGAATGTCCAGCGGATTCCACGCCGACATGATGATACGTC- 1469152 Query 147192 GCTCTCG--GGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGG 147249 | || || || || |||| ||| || |||||| | |||| || || | ||||| | Sbjct 1469151 GATC-CGAAGGATTGTTCTTGATCGTGTCAATAACCTGCTTCAGTTGATCGATGCCCTTG 1469093 Query 147250 CCCCCGTAGT--TTGTCCC--GCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAA 147305 || | ||||| | ||| | | ||| || || |||||||||| ||| ||||| Sbjct 1469092 CCGCGGTAGTCATCGTCACAGGTAGT----ATATTCAGCACCAAAGTGCCGCCATTGGAA 1469037 Query 147306 GCCGTACACTGGCCCCAGGTCGCC 147329 ||||| || || |||| ||| || Sbjct 1469036 ACCGTATACCGGGCCCAAGTCACC 1469013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583447885200000