Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5215 127 2e-24 seq5008 114 1e-20 seq5213 102 7e-17 seq5218 98.7 9e-16 seq5076 82.4 7e-11 >seq5215 Length=2160492 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || ||||||||| ||||||||||||| | ||| || | || || Sbjct 1797070 CACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTC 1797129 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || ||||| ||||||||||| | || | || |||||||||| Sbjct 1797130 GAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 1797189 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | |||||| | || ||||||| ||||| || || Sbjct 1797190 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTT 1797249 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| ||||| || ||||| || |||||||| Sbjct 1797250 ACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 122 bits (134), Expect = 8e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | || |||||| || |||||||| |||| Sbjct 1797507 TTCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 1797566 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || | || || |||||||| || || || ||||| ||||||||||| | | Sbjct 1797567 AGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 1797626 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686 | | || ||||||||| |||| || |||| ||| | | || ||| | ||| Sbjct 1797627 GGATGCCCTCCTTGTCTTGGATC-TTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCC 1797685 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||||| ||||| ||||| || ||||| ||||||||||| ||||||||| || Sbjct 1797686 ACCTCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 1797739 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 1797316 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 1797375 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 1797376 GATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 1797435 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | || ||||||| ||||| || ||||| ||||| || ||||| Sbjct 1797436 CTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCAC 1797495 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 1797496 GAAGATCTGCATTC 1797509 >seq5008 Length=644625 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 |||||||||||| || || |||||| || |||||||| |||| || ||| || |||| Sbjct 342974 CAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 342915 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || || || |||| |||||||| || | || | || ||||||||| Sbjct 342914 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTC 342855 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | || ||| | || ||||||| ||||| || Sbjct 342854 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGGGTGATGGT 342795 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || || || || |||||||| Sbjct 342794 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 342762 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || |||||||| |||| || ||| || |||| || Sbjct 342743 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 342684 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| |||||||| || | || | | |||||||||| Sbjct 342683 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTG 342624 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | || ||| | || ||||| | ||||| || || Sbjct 342623 GATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGTGATGGTCTT 342564 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || |||| || ||||| || || |||||| || Sbjct 342563 GCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 342530 >seq5213 Length=770604 Score = 102 bits (112), Expect = 7e-17 Identities = 204/295 (69%), Gaps = 12/295 (4%) Strand=Plus/Plus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 ||||||| | || ||| |||||| | || || || ||||||||| | | |||| | Sbjct 538371 TGTGGAATTCGGCTCAACTACAACTAGTACGTGAGGGCAAAATGCACGGCTTCCTGCGCA 538430 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGA----TGCGCAAACCGCGCTCGTT 44246 |||| ||| || ||||| | |||||| || || || ||| || || | Sbjct 538431 TGTACTGGGCTAAAAAGATCCTCGAGTGGAGCGA-GACTCCTGAGCAGGCC---CTGGAG 538486 Query 44247 CATGCCAT-CTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGT 44305 | ||||| ||| || || || ||||||||| ||||||| || |||||||| || || || Sbjct 538487 TACGCCATTCTA-CTTAATGATAAGTACAGTCTGGACGGACGAGACCCCAATGGTTATGT 538545 Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTA 44365 || || ||||||||||| | || |||| |||| || ||| || | | | |||| Sbjct 538546 GGGGTGCATGTGGTCCATCGGGGGAATCCATGACATGGGATGGAAGGAACGATCTATCTT 538605 Query 44366 CGGCAAAGTGCGCTACATGAACTA-CAACGGTTGCGTCAGAAAGTTTGATGTAAA 44419 || || | |||||||||||||| ||| | | || | | || || |||||||| Sbjct 538606 TGGAAAGATACGCTACATGAACTATCAAGGCTGTCGAC-GTAAATTCGATGTAAA 538659 >seq5218 Length=3038582 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || || ||| |||||| |||||||| || || | Sbjct 2718271 CCACCACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAG 2718330 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || |||| |||||||| || | |||| Sbjct 2718331 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 2718390 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| ||||| || | | || | | || || || ||| ||| Sbjct 2718391 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 2718450 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 2718451 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq5076 Length=596799 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| || | | ||| || | || || Sbjct 35299 CACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTC 35240 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| |||| |||||||| || | || | | || |||||| Sbjct 35239 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTTGTCCTG 35180 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||||| | || ||||| | ||||| || || Sbjct 35179 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGATGGTCTT 35120 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | |||||||| || || ||||| Sbjct 35119 GCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450762607940000