Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5218 159 3e-34 seq5008 129 6e-25 seq5215 118 1e-21 seq5076 118 1e-21 >seq5218 Length=3038582 Score = 159 bits (176), Expect = 3e-34 Identities = 1118/1782 (63%), Gaps = 38/1782 (2%) Strand=Plus/Plus Query 7534 AAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGC 7593 |||||||| || || ||| || ||| || |||||||| |||||||||| | || Sbjct 2801104 AAAATCAATGGTAAAATCGCCGAGCGACCCCAGCACATGCTTATGCGCGTGGCAATCGGA 2801163 Query 7594 ATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAG 7653 || || || |||||||| || || ||| |||| |||||| | || | || | | Sbjct 2801164 ATCCATGGAGAAGACATCGATGCTGCCGTGGAGACGTACAACTTGCTTTCGGAGCGTTAT 2801223 Query 7654 TTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCG 7713 || |||||||||||||| || | |||||||| | |||||| || || | || || Sbjct 2801224 TTCACGCACGCTTCGCCAACGCTATTTGCCGCTGCCACAAATCGTCCCCAGCTATCGTCT 2801283 Query 7714 TGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC-GCTGCGCGA 7772 |||||| | || |||||| ||| || || || || | ||| | | || || | Sbjct 2801284 TGTTTTCTCCTGACCATGACTTCCGACTCGATTGAGGGTATCTTCAAGTCAGTTGAGCAA 2801343 Query 7773 TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC 7832 | |||||| || ||||| | | || || || ||||| || || | | || || Sbjct 2801344 T-GCGCCATGATCTCCAAGTCTGCAGGTGGTATTGGTCTTAATGTCCATTGTATTCGTGC 2801402 Query 7833 CAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCG 7892 || |||| ||| |||||||| | ||| ||| | | || ||| || | Sbjct 2801403 AAAGGGTACTTCCATTTGCGGAACCAACGGCACTTCCAATGGTCTGGTTCCTATGCTGAG 2801462 Query 7893 CGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGC 7949 || || || |||| || ||| |||| || ||||| || ||||| || ||| Sbjct 2801463 AGTCTTTAACAACGTGGCACGATATGTGGATCAGGGTGGTGGCAAGCGGCCGGGAGCCTT 2801522 Query 7950 TGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAA 8009 |||||| ||| | ||||| ||||| |||| ||| | | || | || || Sbjct 2801523 TGCCATTTATCTAGAGCCCTGGCATTCGGATGTTTTTGAGTTTCTGGACCTTAAGAAGAA 2801582 Query 8010 CATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATC 8068 | || ||||| || | | || || ||| | |||| | ||||| | || |||| Sbjct 2801583 TACTGGCAAGGAAGAGCATCGA-GCCCGTGATTTGTTCTATGCCCTGTGGATACCAGATC 2801641 Query 8069 TGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCC 8128 | || |||| || || | | | | | |||||||| | || ||| | |||| Sbjct 2801642 TCTTCATGAAACGAGTGGAGGCCAATGAGGACTGGTCGCTTTTCTGTCCCCACAAATGCC 2801701 Query 8129 CTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACG 8188 || | | | | || | || | |||||| | | || |||||||||| | Sbjct 2801702 CTGGACTTCATGATGTGTGGGGCGATGAGTTTGAAAAGCTATATGTGAAATACGAACAGG 2801761 Query 8189 ACGG-CGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGT 8247 | || |||| | || || ||||| | | || |||||| || || | Sbjct 2801762 AGGGACGCGCAAAC-CGAACTGTAAAAGCACAGTCCTTGTGGTTCGCCATCATTGAGTCG 2801820 Query 8248 CAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAAT 8307 ||| || || || | || |||||||| | ||| ||||| |||||| || ||||| Sbjct 2801821 CAAGTGGAGACTGGCAATCCTTACATGCTCTTCAAGGACGCGTGCAACCGAAAGAGCAAC 2801880 Query 8308 CAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGC 8367 ||| ||||||||||||||| ||||| ||||||||| | |||||||| ||||| Sbjct 2801881 CAACAGAACGTGGGCACCATTAAATGCAGTAATCTGTGCACGGAAATTGTCGAGTACTCT 2801940 Query 8368 GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGAT 8427 |||||||||| | || ||||||||| | || ||| | | | ||| ||| || Sbjct 2801941 TCGCCCGACGAGATTGCAGTTTGCAATTTGGCATCGATCGCTCTCAACATGTTTGT---- 2801996 Query 8428 CGACGCTCA---AACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGT- 8483 ||||| || || || || ||||| || | | || | | | ||| |||||| Sbjct 2801997 -GACGC-CAGAGAAAACATATGACTTCAAAAAGCTTAAGGAGGTC--ACAA-AGACGGTG 2802051 Query 8484 --ACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTA 8541 | || | || || || ||| | || ||||| || || || || | | | Sbjct 2802052 GCCAGAAACCTCAATAAGATAATAGATATAAACTTTTACCCACTGCCGGAGGC-CAAGAA 2802110 Query 8542 -TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGC 8600 || || | | || | || ||||| | ||||| || |||||||| |||||| | Sbjct 2802111 GTCCAATTTAAGGCATCGTCCTATTGGCATCGGCGTTCAGGGTCTGGCTGACGCGCTGAT 2802170 Query 8601 CATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGA 8660 | |||| |||||||||||| | || || || | | ||| | | || || Sbjct 2802171 TCTTATGCGTTATCCCTACGAAAGCGAGGAGGCCAGCCTCTTAAACCAACAGATCTTTGA 2802230 Query 8661 AACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTA 8720 ||| | || | || || | |||||||| || |||| |||| | ||||| || Sbjct 2802231 AACCATTTACTTTGGAGCCCTGGAAGCCAGTTGCGAACTGGCCCAAAGGGACGGCACCTA 2802290 Query 8721 CGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGT 8780 ||| | || | || || || | ||| ||||| |||| |||||||||||| || Sbjct 2802291 TGAAACTTATGAAGGAAGTCCGGTCAGTAAGGGAATTCTGCAGTACGACATGTGGGATAA 2802350 Query 8781 CACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTT 8840 ||||| || | | ||| | |||| | | |||| || || || | Sbjct 2802351 AACGCCGACAGATCTTTGGGACTGGAAAGGTCTGAAGGAGTCCATCAAAAAACATGGAGT 2802410 Query 8841 GCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAA 8900 | || || || ||||||||| |||||||| || ||||||||||||| ||||| || Sbjct 2802411 TAGAAACTCCCTTTTGGTGGCTCCGATGCCCACAGCATCGACTGCTCAAATTATGGGTAA 2802470 Query 8901 CAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGA 8960 ||||||||||| ||||| | || | || | || ||||| || | | ||||| Sbjct 2802471 TAACGAATCCTTCGAGCCCTATACAACAAATATTTATACAAGACGCGTACTCTCTGGCGA 2802530 Query 8961 TTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTT-TACGACG 9019 || | || | || | ||||||| || | || |||| || ||| || || | |||| Sbjct 2802531 GTTCCAAGTGGTCAACCATCATTTGCTGAGGGATTTGA-CGGAGCTGGATTTGTGGGACG 2802589 Query 9020 ACAAAATGCGCGATGCCATCGTGGAAGCCAAC---GGCAGCGTTCAGAACATTGACGCGG 9076 | | ||| || ||| | | ||| | || | |||| || ||||| | Sbjct 2802590 ATGACATGAAGAATCAGATCAT---ATCCAGCAGGGGATCCATTCAAAATATTGAATCAA 2802646 Query 9077 TGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAA--TGAAGCAAAGCACGCT 9134 | || ||| | | ||| || || ||||| |||||||||| | | ||| || Sbjct 2802647 TTCCACAAAAGGTCCGAGACCTTTACAAAACAGTTTGGGAAATCTCAGTTAAATCA--AC 2802704 Query 9135 GATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTT 9194 || ||||| || ||| | || || ||||| |||||||| || || || || | Sbjct 2802705 AATTAAAATGGCCGCAGATCGCGGTGCGTTTATAGATCAGAGCCAGTCCTTCAATATCCA 2802764 Query 9195 CGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGG 9254 || || | |||| || | | | | ||| |||| | | |||||| || Sbjct 2802765 TGTGGCAGAGCCAAACTATGGAAAGCTCACATCCATACATTTCTACTCCTGGAAAGCTGG 2802824 Query 9255 TTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGC 9296 | | ||||| || |||||||| ||||||||||| || || || Sbjct 2802825 TCTTAAAACCGGAATGTACTACTTGCGCACAAAGCCAGCTGC 2802866 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| | || || ||||| |||||||| ||||| | ||| | Sbjct 2718280 AGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGG 2718339 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || |||||| Sbjct 2718340 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 2718399 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | || || |||| ||| || || ||||| Sbjct 2718400 TTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTG 2718459 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 ||||| || || || | || |||||||| || ||||| ||| || Sbjct 2718460 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGATT 2718504 >seq5008 Length=644625 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| | ||| || ||||| ||||| || |||||||||||| Sbjct 342760 CCTCCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342701 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| || || |||| |||||||||||| || || Sbjct 342700 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342641 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| || | || ||||| | || || Sbjct 342640 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACC 342581 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| || || || | || || |||||||||||||||||| Sbjct 342580 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 342530 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | || | ||||| ||||| || |||||||||||| | |||| | Sbjct 342979 AGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 342920 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||||||| || || ||||| || Sbjct 342919 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCC 342860 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | || ||||| | || || || || || Sbjct 342859 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGGGTG 342800 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| || ||||| Sbjct 342799 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 342762 >seq5215 Length=2160492 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | |||| | || |||||||| Sbjct 1797532 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 1797591 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || |||||||||||||| || || || ||||| || || ||||| || || Sbjct 1797592 CTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 1797651 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| || | || ||||| | ||||| || | || |||||||| || || Sbjct 1797652 GGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTTCCAGT 1797711 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 || ||||| || || || ||||||||| Sbjct 1797712 CAAGGTTTTCACAAAGATCTGCATTTTG 1797739 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || | ||| | ||| || || || |||||||| |||||||| ||| Sbjct 1797052 TCCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGA 1797111 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || |||||||| || || || || |||||||||||||| || || || Sbjct 1797112 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797171 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || || || || || | |||||||| | || || Sbjct 1797172 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGAC 1797231 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| ||||| || || || || ||||| || ||||| Sbjct 1797232 CTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | |||| | || |||||||| Sbjct 1797304 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 1797363 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || |||||||||||||| || || || ||||| || || || || || || Sbjct 1797364 CTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 1797423 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | |||||||| | || || || ||||| ||||| ||||| || Sbjct 1797424 GGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGT 1797483 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || |||||| Sbjct 1797484 CAAGGTCTTCACGAAGATCTGCATT 1797508 >seq5076 Length=596799 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || || || ||||| || ||||||||||| || |||| | Sbjct 35307 AGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 35248 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| ||||||||||||||| || || |||||| Sbjct 35247 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCT 35188 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| || | || || ||||| || Sbjct 35187 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTG 35128 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||||| ||||| |||||||| Sbjct 35127 ATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505363653860000