Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5218 540 1e-148 >seq5218 Length=3038582 Score = 540 bits (598), Expect = 1e-148 Identities = 1248/1861 (67%), Gaps = 26/1861 (1%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 ||||||||||||| || || || ||||| || | |||||||| |||||||| ||| Sbjct 2802884 GTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCGGTTTTAAGA 2802825 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || |||| ||||||||| || ||| || || ||| |||| || || | | Sbjct 2802824 CCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGGCTCTGCCACA 2802765 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || ||||| | || || || ||||| || || || || | |||||| |||||||| || Sbjct 2802764 TGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGCCATTTTAATT 2802705 Query 68554 ATACTCTTT--TGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || |||| |||||||||| || || ||| | | || | | ||||| Sbjct 2802704 GTTGATTTAACTGAG--ATTTCCCAAACTGTTTTGTAAAGGTCTCGGACCTTTTGTGGAA 2802647 Query 68612 --GGCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCAT 68668 | || |||||||||||||||| | |||||| || |||||| || ||||| | Sbjct 2802646 TTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCTTCATGTCATCGT 2802587 Query 68669 TCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCC 68728 |||||| | |||||| ||| | || || | ||| | || || | ||| || || | Sbjct 2802586 CCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCACTTGGAACTCGC 2802527 Query 68729 CAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTC 68788 |||| | || | | || |||||||| | ||||| || || | ||||| ||||| | Sbjct 2802526 CAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATTCGTTATTAC 2802467 Query 68789 CCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 68848 ||| |||||||||||| ||||| || ||||| || |||||||| | ||||||| | Sbjct 2802466 CCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGTTTCTAACTC 2802407 Query 68849 CATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||||| || |||| || || ||| |||||| ||||||||||| | || || Sbjct 2802406 CATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTGTCGGCGTTTTAT 2802347 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||||| || |||||||| ||||| | ||| | ||| |||||||| | Sbjct 2802346 CCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAAGTTTCATAGG 2802287 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGA 69028 || ||| || || ||||| ||||| || || | || || | ||||| ||||| | Sbjct 2802286 TGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAA 2802227 Query 69029 AAATCT-TCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATA 69087 | |||| | || ||| || || || | || ||| | |||||| | | |||||| Sbjct 2802226 AGATCTGTTGGTTTAAGAGGCTGGCCTCCTCG-CTTTCGTAGGGATAACGCATAAGAATC 2802168 Query 69088 AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT 69147 | || || |||| |||||||| || || || ||||| | ||| || | | ||| |||| Sbjct 2802167 AGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT-TAAATTGGACTT 2802109 Query 69148 -TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTAC 69206 | || || || | || ||| | || |||||||| || ||||| || |||| | | || Sbjct 2802108 CTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCAC 2802049 Query 69207 TACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCT---ATAACAAACAT 69263 || || ||||| || || || ||| || | ||| | |||||||| Sbjct 2802048 CGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTGGCGTCACAAACAT 2801989 Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 || || || | ||||| | ||| |||||||| | ||| | | | || | | Sbjct 2801988 GTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAGTACTCGAC 2801929 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 || || || || |||||||| ||||| || || |||| || || || || |||||| Sbjct 2801928 AATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCG 2801869 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||| || ||||||||| | || || | ||| | ||||| || | || || || || || Sbjct 2801868 GTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGAT 2801809 Query 69444 AGATTTCCA-AACGACCCTAGCATTT--ATTACGGTCTTGTAACGCTT--CTCTTTTTCA 69498 | ||| || ||| | || ||| | | |||| ||| ||| | ||| | ||| Sbjct 2801808 GGCGAACCACAAGGACTGT-GCTTTTACAGTTCGGT-TTG---CGCGTCCCTCCTGTTCG 2801754 Query 69499 TATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCA 69558 |||| ||||||| ||| || ||||| ||||| ||||||| | |||||| |||| Sbjct 2801753 TATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTG 2801694 Query 69559 TTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGA 69618 | ||||| | | ||||| | |||| ||| ||||||||||| || ||||| || Sbjct 2801693 TGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGT 2801634 Query 69619 ATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttttt 69677 ||||| || || ||| || | ||| | || || || ||||| || || ||||| || || Sbjct 2801633 ATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTATTCTTCTT 2801575 Query 69678 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCC 69737 ||| || |||||||| | || ||| |||||||| || |||||||| || || | | |||| Sbjct 2801574 AAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCC 2801515 Query 69738 CGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCAT 69797 ||| || || || |||||||| | |||| || ||| ||| ||||||||||||| Sbjct 2801514 CGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCAT 2801455 Query 69798 CGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT 69857 |||| | |||||| || | || || ||||| |||| || | || |||| ||||| Sbjct 2801454 AGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTTTGCACGAAT 2801395 Query 69858 ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAA 69917 | | | | ||||| || || ||||| || ||||| | || || | | | Sbjct 2801394 ACAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATGGCGCATTGCTCAAC 2801335 Query 69918 TGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACAT 69977 || | | |||||||| || || ||||| | || |||||||| || | Sbjct 2801334 TGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGAAAACAAGACGATAG 2801275 Query 69978 TTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTC 70037 || || | | || | || ||||| || || || ||||| ||||| | || Sbjct 2801274 CTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGCGTGAAATAACGCTC 2801215 Query 70038 AGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGC 70097 ||||||| ||||| || || | || | || || || ||| ||||| || || Sbjct 2801214 CGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCATGGATTCCGATTGC 2801155 Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTA 70157 || ||||| | ||| ||||| ||||| || | ||||| ||| ||||| | ||||| Sbjct 2801154 CACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCATTGATTTTAAGGAGGTA 2801095 Query 70158 TGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || |||||||| || || ||||| |||||||| |||||| | || ||||| || Sbjct 2801094 CGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGTCACGATCATAAATTAT 2801035 Query 70218 A 70218 | Sbjct 2801034 A 2801034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686861575020000