Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq1017 320 2e-82 seq1345 104 2e-17 seq1112 100 3e-16 >seq1017 Length=11781 Score = 320 bits (354), Expect = 2e-82 Identities = 1622/2559 (63%), Gaps = 87/2559 (3%) Strand=Plus/Plus Query 107067 AATCTTTCAAACCTAAGAGCTCTTGGAGACCCTATTAAGGGGATTGAGGGAGCAGGTAGC 107126 |||||||| |||||||||||| ||| || || ||||| ||| | ||||||| || Sbjct 7284 AATCTTTCTAACCTAAGAGCTGCTGGTGATCCCATTAAACACATTCAAGGAGCAGCCAGT 7343 Query 107127 GGTGTTGTTCCTGTTATGAAAATGCTAGAAGACGGTTTCCGGTACGCAAATCAGTTAGGG 107186 |||||| |||| || ||||| | |||||||| ||||| || | || || |||| Sbjct 7344 GGTGTTCTTCCAGTAATGAAGTTACTAGAAGATAGTTTCACCTATTCCAACCAACTAGGC 7403 Query 107187 CAAAGACAAGGTGCAGGCGCAGTCTATCTAAATGTTTTCCATGCGGATATTATGGACTTT 107246 |||||| | ||||| || | || ||||| | |||||||||| | || || || | || Sbjct 7404 CAAAGAAACGGTGCTGGGGTTGTTTATCTTAGTGTTTTCCATCCTGACATCATTCAATTC 7463 Query 107247 TTATCAACTAGAAAAGAAAATGCAGAATCCGCAAA---GCAAATCAAAACACTTTCTTTG 107303 || | || ||| ||||| || || || ||| | | | || || ||||| | Sbjct 7464 TTGGGAGTTAAAAAGGAAAACGCCGA---CGAAAAAATCCGAGTAAACACCCTTTCACTT 7520 Query 107304 GGAGTAGTTGTTCCCGATAAATTTTATGAGCTAGCTGAGTCTGGGGATGTAATTCACTTA 107363 || || ||||| || ||||||||||||||||| ||| | || |||| || || || Sbjct 7521 GGTGTGGTTGTGCCAGATAAATTTTATGAGCTCGCTAAAAATGATGATGATATGTACCTA 7580 Query 107364 TTTTCTCCATATGATGTTGCTAAAGAATACGGTGTACCATTCTCATTTGTAGACATTGAT 107423 || |||||||||||||| || || || || || ||||||| ||| || ||| | Sbjct 7581 TTCAGTCCATATGATGTTGAACGTGAGTATGGAGTTCCCTTCTCATATGTTGATATTTCT 7640 Query 107424 TCAGAATACAATAACATGATTCAGAACCCAAATATCAGAAGTAAGGTAATGAAT---GCA 107480 ||||||| | || ||| | ||||| || | || |||| || || | || Sbjct 7641 AAAGAATACGACAATATGGTCAAGAAC---AAGAACATTTCTAAGAAAAAGATTCGAGCT 7697 Query 107481 CGAGATTTGGAAGAAGAAATTAGCCGTTTACAACAAGAGTCAGGTTACCCATATATTATG 107540 || || | ||| ||||| | |||||||||| || || || ||||| ||||| Sbjct 7698 CGTGAACTTGAAACCGAAATCGGAAAACTACAACAAGAATCTGGCTATCCATACATTATC 7757 Query 107541 AATGTTAGTACTGTAAATAAAGCCAATCCTATTGATGGCAAAATCATTATGAGTAATTTA 107600 || || || || || | ||||| |||| ||||| || | ||||||||| | Sbjct 7758 AACATTGACACCGTTAACCGTGATAATCCGGTTGACGGCAAGATTGTCATGAGTAATCTG 7817 Query 107601 TGCAGTGAAATATTACAGGTACAGACACCATCTAAGCTAAATGATGAACAAGTATACGAA 107660 || | ||||| | ||||| |||||||| || | | | ||||||||| |||||| Sbjct 7818 TGTACCGAAATTCTCCAGGTTCAGACACCTTCCATCGTTGACGATGAACAAAACTACGAA 7877 Query 107661 GAGTTAGGTACAGACATTAGCTGTAATTTAGGTTCAATTAACATCCTTAACTTGTTAGAA 107720 ||||||| || || | |||||| | || || | |||| | | ||| | | | Sbjct 7878 CAGTTAGGAACCGATGTCTCATGTAATCTGGGCTCTACTAACGTAGTGAACCTCATGG-- 7935 Query 107721 ACATCTAATGATGTAGTGGCATCAATTGAGACGATGGTAAGAGCTCTAACATATATTACA 107780 |||| || | | |||| |||| | ||||| | ||||||||| | |||| Sbjct 7936 -CATCACCAGACTTCGGTAAATCAGTTGAAGCCATGGTGAAAGCTCTAACCTTCGTTACC 7994 Query 107781 GATGTGTCAAATATAAAAGCAGTACCTACTATCAAGAATGGTAATGATAAAGCCCATACA 107840 ||| ||| || || | || || | | || | || ||||| | || || Sbjct 7995 GATCACTCATCAATTAACGTGGTTCCATCAGTTAAACACGGAAATGAACTAAGTCACTCA 8054 Query 107841 ATTGGTTTAGGGGCAATGGGGCTACATGCGTGGTTCGCAAGTAACCAAGTAGAATATGGC 107900 |||||||| || || ||||| || ||| | | || || | || || | | |||||| Sbjct 8055 ATTGGTTTGGGAGCCATGGGTCTTCATTCATATTTTGCTAAAAATCATATGTACTATGGC 8114 Query 107901 TCACCTGAATCTATTGAAATGACGGATGCC--CTGTTTGAATTAATTAACTATGCTACTT 107958 |||||||| || |||||| | || | || || | || || | ||||| || Sbjct 8115 TCACCTGAGTCCATTGAATTTACCAGTACCTACTTTATGCTTT--TAAACTACTGGACCC 8172 Query 107959 TGGTGGCAAGTAACAAGATTGCTAAAGAGCGTGGCACAACATTCCATAACTTTGAGAACT 108018 || ||| ||| | || ||||| || || || | | |||||||| || || || Sbjct 8173 TGAAGGCTTCTAATCAAATGGCTAAGGATCGCGGAAAAGTTTTCCATAATTTCGAAAAAA 8232 Query 108019 CTAAATACGCAGACGGTTCTTACTTTGATGAATA-TGTACCAACACTAAATCAGGAAATC 108077 |||||| || || || ||||| || ||| | || |||||| | | | ||| Sbjct 8233 GTAAATATGCTGATGGATCTTATTTCGATCAGTACACTACCAAGAGTTGGGCTCCAAA-G 8291 Query 108078 TCTAGTAAGGTGGCGGAAGTATTTGATGGAGTGGTACTACCTAATGTAAAAGATTGGGAA 108137 || ||| || | | |||||||| || | | || | | |||||| ||| | Sbjct 8292 TCAGATAAAGTAAAATCACTGTTTGATGGCGTCTTTATTCCAACCGAAAAAGACTGGAAC 8351 Query 108138 ACATTAAGAAACAGT--ATTATTGAAGGTGGTCTATACCATCAAAACCGTTTAGCTGTGG 108195 | ||| ||||| | | || || |||||| |||||||| || || | || || | Sbjct 8352 GCTTTA--AAACAATCAGTCATGGAGTATGGTCTCTACCATCAGAATCGCATGGCCGTAG 8409 Query 108196 CTCCAAATGGTAGTATTGCTTATGTTAATGAGACTACTTCTTCATTGCACCCAATTATCT 108255 |||| |||||| | |||||| || || | || | ||||| || ||| | Sbjct 8410 CTCCTAATGGTTCAACTGCTTACATTGGGGATGCAACAGCAAGTTTGCATCCGATTGTTC 8469 Query 108256 CTATGATTGAAGAACGTCAAGATGGGAAAACAGGTAAAACTTATTACCCTGCACCCCGGT 108315 | ||||||| ||| ||||| || | || | | ||| ||||| || || Sbjct 8470 AAAAAATTGAAGCACGCCAAGAATCAAAGATTGGAACCATTTACTACCCGGCTCCATACC 8529 Query 108316 TATCTGAGAAGACAATTCCATATTACAAGTCAGCGTACAATACAAGTATGATTGACGTAA 108375 | || | | || ||||| || || | ||||| || | || ||| | | |||| Sbjct 8530 TTTCAAATGACACCATTCCTTACTATGAATCAGCCTATGACACTGACATGCGTAAAGTAA 8589 Query 108376 TCAACGTGTACGCAACAGCACAAAAACATATTGACCAAGGTATGAGTTTAACATTGTTTA 108435 | | || ||||| | || ||||| || |||| ||||| ||||||||||| | |||| Sbjct 8590 TTGATGTTTACGCTGCCGCTCAAAAGCACGTTGATCAAGGAATGAGTTTAACCCTCTTTA 8649 Query 108436 TGCGCTCAGAGTTACCAGAAAATCTTTATCCTTGG-AAGGTGG-AG-GGTGGCGCTACAT 108492 |||| ||| | ||| | ||||||| ||| ||| ||| || ||| | | | Sbjct 8650 TGCGTTCAACCATTCCAAAGGGTCTTTATGAATGGAAAGATGGTAGAAGTGACAAAATGT 8709 Query 108493 CCACTCGGGACTTAACTTTATTAAGACATTATGCATGGAAAAAAGGTATAAAAACAATTT 108552 | || | || ||||| | | || ||||||| | |||||||| || ||| || | | Sbjct 8710 CAACCAGAGATTTAACGATCCTTCGAAATTATGCTTACAAAAAAGGCATTAAATCACTCT 8769 Query 108553 ATTATGTTAGAACATTCACCGAAGAAGACGGAAGCGAAGTAGGGGTTTCAGAGTGTGAAA 108612 |||| || |||| || || || || | | ||||| || | || ||||||| Sbjct 8770 ATTACGTGCGAACCTTTACTGACGATAA---TACTGAAGTTGGTGCCAATGAATGTGAAA 8826 Query 108613 GTTGTACAATTTA------AGGAG-----ATGAGCACATGAAT------TT-----GCAA 108650 | || |||||| ||||| | | |||| ||| || | || Sbjct 8827 GCTGCGTAATTTAATCCTTAGGAGGAAATACATGGACATTAATAAAGTCTTAACCGGAAA 8886 Query 108651 G--AAAAG-----TATGAAGGAATTAACTGGAATAAGATTGATGATGTAATTGACCAAGC 108703 | ||||| || ||| |||||||||||| |||||||||| ||||||| |||| Sbjct 8887 GTCAAAAGGAAACTACAAAGCGATTAACTGGAATTCTATTGATGATGAAATTGACAAAGC 8946 Query 108704 CACATGGAAAAAGCTTACTGAGCAATTTTGGTTGGACACACGTGTCCCTGTAGGTAACGA 108763 || ||| |||| | || ||||| || ||| | || || | | || || ||||| Sbjct 8947 TACCTGGGAAAAATTAACCGAGCAGTTCTGGCTTGATACTAGAATTCCACTATCAAACGA 9006 Query 108764 TGTTAATGATTGGGCAAAGCTCTC-TGATATGGAGCA-AGAT--TTAATAAATAAAGTGT 108819 | | || || ||| | || | |||| || || | || | | | | || | Sbjct 9007 TCTAAAGGACTGG----CGTTCACTTGATGATGATCACAAATGGATTGTTGGTCACGTCT 9062 Query 108820 TTGGTGGGTTAACATTACTAGACACAGTTCAATCAGAATCGGGGGTACACTCACTACTTG 108879 |||| |||||||| ||||| || || |||| || || || | | || | Sbjct 9063 TTGGGGGGTTAACTTTACTGGATACCCTTCAGTCTCAAGACGGAATGGCAGCCCTTCGAA 9122 Query 108880 ATGATGTAAGAACACAGCATGAAGAAGCTGTTTTAAATAACATAGCCTTTATGGAAGCAG 108939 | |||| ||| || |||||| || |||||||||||||| ||||||||| ||| Sbjct 9123 AAGATGCGGTAACGCAACATGAAATTGCGGTTTTAAATAACATTCAGTTTATGGAATCAG 9182 Query 108940 TACACGCTAAAAGTTATTCAACAATTTTTAGCACATTTAATACACCTACAGAGATTGACA 108999 |||| ||||| ||||| || |||| ||| || || || || ||| || ||||| Sbjct 9183 TACATGCTAAGAGTTACTCTTCAATCTTTTCGACTTTGAACACCCCTGATGAAATTGATG 9242 Query 109000 ATATCTTTGAATGGGTAGCTACAAATAAACGTTTACAATATAAAGCTAACA----TTATT 109055 | |||||| | ||| | ||| | || | | ||| | ||| | || | |||| Sbjct 9243 AGATCTTTCATTGGAGTGACACAGAAGAATTTCTTCAAAACAAAACCAAAAAAATCTATT 9302 Query 109056 AACGATATTTATCGAAACGGTACA-CCACTACAGAAAAAGAGTGCATCCGTACTGTTGGA 109114 || ||| ||| | ||| ||||| | || || | | || || | | || Sbjct 9303 CAC--TATACCACGATGATGGACATCCACTTAAAAAGAAAATTTCAAGTGTCTTTCTTGA 9360 Query 109115 GAGCTTCCTATTTTACTCAGGTTTTTACACACCACTACGCTATTTAGGTGAGGCAAAAAT 109174 | || || || || || || || || || || | | ||| | ||| | || | Sbjct 9361 AACATTTCTTTTCTATTCTGGATTCTATACCCCTATTTGGTATCTTGGTCATAACGAACT 9420 Query 109175 GGTTAATACAGCCGAAATTATTAAATTAATTATTCGTGACGAGTCTGTACATGGAACCTA 109234 || || || || || || || |||||||||||||| || || |||||||| || Sbjct 9421 TCCAAACGTTGCTGAGATCATCAAGTTGATTATTCGTGACGAATCCGTTCATGGAACTTA 9480 Query 109235 TATCGGCTATAAATACCAGTTAGGGTTTAACCAGTTACCAGAAACTGAACAAAAAGAAAT 109294 || || ||||||| ||| | ||| || || ||| ||||| |||||||| || | Sbjct 9481 CATTGGTTATAAATTCCAAGTTCAGTTCAATCAATTAGGAGAAAACGAACAAAACGACTT 9540 Query 109295 GGAACAATGGGT-----AATTGATTTAGCATTTAAATTATGGGAGAACGAAACACAGTAT 109349 || | ||| | | || | || || | |||| | |||||| | ||||| Sbjct 9541 AAAAGATTGGATGTATAACTTTTTGTACGATCT---TTAT--CAAAACGAAGAAAAGTAT 9595 Query 109350 ACTGCTGAACTATATAGTGAGATTGGTTGGACAAAAGATGTTAATACATTTTTGGAGTAC 109409 ||| | || || | | | || ||||| | || ||| || || | ||| Sbjct 9596 ACTCATCTGCTTTACGATCAAGTAGGGTGGACTGACGACGTTTTAACCTTCATTCGTTAC 9655 Query 109410 AATTTAAATAAAGCTCTAGCTAACTTAGG-GATGAACCCTTTATTCCCAACAACAAGTGC 109468 ||| || ||||| || || |||| | || || | | ||| ||| || | Sbjct 9656 AATGCCAACAAAGCATTAATGAATCTAGGACAGGATCCAATGTTCCCCGACACTGAG-GA 9714 Query 109469 AGACGTAAACCCTATTGTAATGAATGGTATCTCTACAACAACTAGTAACCATGACTTCTT 109528 ||| || || || ||||| ||||| || || || || |||| ||||||||||||||| Sbjct 9715 AGATGTTAATCCAATTGTTATGAACGGAATTTCAACGGCAACGGTTAACCATGACTTCTT 9774 Query 109529 CTCTCAGGTAGGTAATGGGTACTTACTAGGTAAAGTAGA 109567 ||| || || ||||| || ||| ||||| || ||||| Sbjct 9775 CTCACAAGTGGGTAACGGTTACCGTCTAGGAAACGTAGA 9813 >seq1345 Length=12888 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 89507 ATTTTAGTACCAACCATTTGCTAACCAGAAAGATTTTGCGTTCTCCCATGAGCCATAGCG 89566 || |||||||||||| | || | |||||| |||| ||| |||||| ||||| || Sbjct 8015 ATCTTAGTACCAACCGTGTGATTGCCAGAATGATTGTGCACCACTCCATGAACCATAACG 8074 Query 89567 ACCTGCTACATACTCATCAGCTACTCGTTCTTGGTTGGCAGGTGAATAGTCACCATTTAA 89626 | ||| || | | ||| |||| |||||||| || ||||||||||||||||||| Sbjct 8075 TGAAGTTACGTATTGGTTAGCAACTCTATCTTGGTTAGCTTGTGAATAGTCACCATTTAA 8134 Query 89627 ATAAGAGGCAGATAATTGGTAACGACCAATATACTGACCATTTGTTGCATCATAAGAACC 89686 || || |||||||||||| ||| || | |||||||| ||| || || || Sbjct 8135 GTATGACTTAGATAATTGGTACTTACCGTAGTAGTTACCATTTGAAGCAGTGTATGAGCC 8194 Query 89687 ACTAGATTCACGTTGTGCAATCCACTCTTTTGCTG 89721 || ||||||||| | ||||| |||| |||| Sbjct 8195 ACCTGATTCACGTGAAGTGATCCAAGCTTTGGCTG 8229 >seq1112 Length=42414 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 89585 AGCTACTCGTTCTTGGTTGGCAGGTGAATAGTCACCATTTAAATAAGAGGCAGATAATTG 89644 |||||| ||||||||||| || || || |||||||||||||| || || | ||||||||| Sbjct 24849 AGCTACCCGTTCTTGGTTAGCTGGAGAGTAGTCACCATTTAAGTATGATGAAGATAATTG 24908 Query 89645 GTAACGACCAATATACTGACCATTTGTTGCATCATAAGAACCACTAGATTCACGTTGTGC 89704 ||| |||||| |||||||||||| | ||| || || || |||||| |||||| Sbjct 24909 GTATTTACCAATGTACTGACCATTTCTGGCACTGTATGAGTTACCAGATTCCACTTGTGC 24968 Query 89705 AAT 89707 || Sbjct 24969 GAT 24971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465497594840000