Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_027341.1 Length=130008 Score E Sequences producing significant alignments: (Bits) Value seq1017 241 1e-58 >seq1017 Length=11781 Score = 241 bits (266), Expect = 1e-58 Identities = 1103/1719 (64%), Gaps = 63/1719 (4%) Strand=Plus/Plus Query 68645 AAATTTCGATTTACAACTTTCATGGGTGCTTATAAATTTTACACACAGTATGCTATGCGC 68704 || |||| || | | | ||||||| |||||| || || || | || || || ||| Sbjct 6942 AATTTTCACTTCAAATCATTCATGGCTGCTTACAAGTTCTATGCTCAATACGCAATGAAA 7001 Query 68705 ACTACAGATAACAAGTCAATT--CTT-GAACGATATGAAGACCGCATTGCTTTTAATGCC 68761 ||| || |||| || || ||| ||| | || ||| || | || | || || Sbjct 7002 ACT---GACGACAACTCCATGTACTTAGAAGGCTACATAGATCGGACAGCAATGAACGCA 7058 Query 68762 TTAGTTATGGCTGATGGTGACGAACAATTGGCTCTTAACATTGCGCATGAAATGATTTCA 68821 || || | ||| |||||||| || |||| ||| | || | || ||||| | ||| Sbjct 7059 TTGTTTCTAGCTAATGGTGACCAAAAATTAGCTATGAATCTAGCTGATGAATTAATTCAT 7118 Query 68822 CAAACCTATCAACCTGCAACACCAACATTCTCTAATGCTGGTAAGTTGCGTGGTGGTAAT 68881 || | ||||||||| || || || || | || ||||| ||| ||| | ||| | Sbjct 7119 CAGCGTTTTCAACCTGCCACCCCTACTTTTTTGAACGCTGGAAAGAAACGTCGGGGTGA- 7177 Query 68882 GCTG-TATCATGTTTCCTTTTGAATATTGAAGATAATATGACGTCTATTGGGCGCTCAGT 68940 | || | ||||||||| | | | | ||||| |||| | || || | | | Sbjct 7178 GTTGATTTCATGTTTCTTACTTCAGACCACCGATAACATGAATACGATCGGTAGAACCAT 7237 Query 68941 AAATTCAGTTCTTCAATTGTCTAAAATGGGTGGTGGAGTTGGAATCAACTTAACTGATAT 69000 ||||||| ||||||||| || ||||| ||||| ||||||||||| || | || | | Sbjct 7238 TAATTCAGCTCTTCAATTATCCAAAATTGGTGGAGGAGTTGGAATTAATCTTTCTAACCT 7297 Query 69001 CCGTCCGTCAGGAGACCCTATCAAGGGTATTGA-GAATATGGCTGATGGAGTTGTTCCAA 69059 | | | || || || || || ||| | | | | | | ||| ||| ||||| Sbjct 7298 AAGAGCTGCTGGTGATCCCATTAAACACATTCAAGGAGCAGCCAG-TGGTGTTCTTCCAG 7356 Query 69060 TCATGAAACT-CTATGAAGATTCATTTTCA--TATGCCAATCAGTTGGGGACAAGAAATG 69116 | ||||| | ||| |||||| | ||||| ||| |||| || | || |||||| | Sbjct 7357 TAATGAAGTTACTA-GAAGAT--AGTTTCACCTATTCCAACCAACTAGGCCAAAGAAACG 7413 Query 69117 GGGCAGGAGTAACTTATCTCAATGTATTCCATAAAGATATTGTTAAATTCCTCTCTACaa 69176 | || || || |||||| | ||| |||||| || || || ||||| | | Sbjct 7414 GTGCTGGGGTTGTTTATCTTAGTGTTTTCCATCCTGACATCATTCAATTCTTGGGAGTTA 7473 Query 69177 aaaaaGAAAATGCTGACGAAAAAGTTCGTGTTAAAACTCTTTCTCTCGGTGTTGTAGTTC 69236 |||| ||||| || ||||||||| | || || || || ||||| || ||||| || || | Sbjct 7474 AAAAGGAAAACGCCGACGAAAAAATCCGAGTAAACACCCTTTCACTTGGTGTGGTTGTGC 7533 Query 69237 CTGATAAATTCTATGAACTCATTGCTAAAGGTGA--ATCA-ATGTATTTGTTTAGCCCTT 69293 | |||||||| ||||| ||| |||||| ||| || | ||||| | || || || | Sbjct 7534 CAGATAAATTTTATGAGCTC---GCTAAAAATGATGATGATATGTACCTATTCAGTCCAT 7590 Query 69294 ATGATATCTACAATGAGTATGGAAAACTAATGTCTGAAATCAACATCACAGAAATGTATG 69353 ||||| | | |||||||||| | | || | | | || | || || | Sbjct 7591 ATGATGTTGAACGTGAGTATGGAGTTCCCTTCTCATATGTTGATATTTCTAAAGAATACG 7650 Query 69354 ATGAATTAGTTGAAAACAAAAATATC---AAGAAAGATAAAATCTTTGCTCGTGACCTTG 69410 | | | || | ||||| || || |||||| || || |||||||| |||| Sbjct 7651 ACAATATGGTCAAGAACAAGAACATTTCTAAGAAA---AAGATTCGAGCTCGTGAACTTG 7707 Query 69411 AAGAAGAAATGTCTAAACTTATTCAAGAATCAGGATATCCATACATCATCAACATTGATA 69470 || ||||| ||||| |||||||| || ||||||||||| ||||||||||| | Sbjct 7708 AAACCGAAATCGGAAAACTACAACAAGAATCTGGCTATCCATACATTATCAACATTGACA 7767 Query 69471 CAGCAAACCAAGAAAATGCTGTTGACGGTGTAATTAAAATGTCTAACCTTTGTTCTGAAA 69530 | | |||| || ||| | |||||||| ||| ||| ||| || ||| | |||| Sbjct 7768 CCGTTAACCGTGATAATCCGGTTGACGGCAAGATTGTCATGAGTAATCTGTGTACCGAAA 7827 Query 69531 TCCTTCAAGTACAATCTCCAT-CAGAATTGAACTCAGACCAAACTTATAAGACTATTGGA 69589 | || || || || | || | || |||| || ||||| || | | | ||| Sbjct 7828 TTCTCCAGGTTCAGACACCTTCCATCGTTGACGATGAACAAAACTACGAACAGT-TAGGA 7886 Query 69590 ACTGACGTATCATGTAACCTTGGTTCAACTAA--TATTACACATCTTATGGAGTCATCTG 69647 || || || |||||||| || || || ||||| || | || || |||| ||| | | Sbjct 7887 ACCGATGTCTCATGTAATCTGGGCTCTACTAACGTAGTGAAC--CTCATGGCATCACCAG 7944 Query 69648 ACTTCGGAAGCTCTGTTAGAACAGCAT--TTCGTGCATTAACCTATGTTGCAGATAGCTC 69705 ||||||| | || ||| ||| ||| | || |||||| ||| | ||| ||| Sbjct 7945 ACTTCGGTAAATCAGTT-GAA-GCCATGGTGAAAGCTCTAACCTTCGTTACCGATCACTC 8002 Query 69706 TAACATTGAAGAAGTTCCTACTGTTAAGAACGCCAACGA--TAAGTATCACTCAGTAGGG 69763 ||| | | ||||| | ||||| ||| || || |||| ||||||| | || Sbjct 8003 ATCAATTAACGTGGTTCCATCAGTTAAACACGGAAATGAACTAAG--TCACTCAATTGGT 8060 Query 69764 CTAGGGGCAATGGGACTACATGGATTCCTTGCTAAAAATGGTATTCTCTATGGTTCTCCT 69823 | || || ||||| || ||| || ||||||||||| ||| |||||| || ||| Sbjct 8061 TTGGGAGCCATGGGTCTTCATTCATATTTTGCTAAAAATCATATGTACTATGGCTCACCT 8120 Query 69824 GAATCAATTGAGTTCACAGGTATGTACTTCCAACTCCTAAACTACTGGACTCTATTTGAA 69883 || || ||||| || || ||| ||||| || ||||||||||||| | |||| Sbjct 8121 GAGTCCATTGAATTTACCAGTACCTACTTTATGCTTTTAAACTACTGGACCC----TGAA 8176 Query 69884 AG----TAATCGAATTGCTATTGAACGCAATCAATCTTTCTATAACTTTGATAAATCAGA 69939 | ||||| ||| |||| || ||| || |||| |||| || || ||| | Sbjct 8177 GGCTTCTAATCAAATGGCTAAGGATCGCGGAAAAGTTTTCCATAATTTCGAAAAAAGTAA 8236 Query 69940 ATATGCCAATGGTAAATACTTCAAACGCTA-TCTACCACGTGTTAAATTCAAAAATAATC 69998 |||||| |||| || ||| | | || |||||| | ||| || ||| Sbjct 8237 ATATGCTGATGGATCTTATTTCGATCAGTACACTACCAAGAGTTGGGCTCCAAA------ 8290 Query 69999 TTTCTGATACAGTCAAAGAATTGTTTAAAGATGTTGATATTCCAACTGCACAAGATTGGG 70058 || |||| ||| ||| | ||||| | | || ||||||||| | | |||| ||| Sbjct 8291 -GTCAGATAAAGTAAAATCACTGTTTGATGGCGTCTTTATTCCAACCGAAAAAGACTGGA 8349 Query 70059 TTGACCTACAAGCTTCAATCGAAGAACATGGTCTATATAACTCTTACCGTTTAGCTGTTG 70118 | || || ||| || || ||||||| || | | || | || || | Sbjct 8350 ACGCTTTAAAACAATCAGTCATGGAGTATGGTCTCTACCATCAGAATCGCATGGCCGTAG 8409 Query 70119 CACCTACAGGTTCAATTTCTTATGTAAATGAAGCAACTGCTTCTATTCACCCAATCGTAC 70178 | |||| ||||||| | |||| | || ||||| || | | || || || || | Sbjct 8410 CTCCTAATGGTTCAACTGCTTACATTGGGGATGCAACAGCAAGTTTGCATCCGATTGTTC 8469 Query 70179 AAAAGATTGAGAAGCGTTCAGAAGGTAAACGTGGTGATGTGTTCTATCCAGCACCTTATC 70238 |||| ||||| || |||| || ||| | | ||| || || || || | Sbjct 8470 AAAAAATTGAAGCACGCCAAGAATCAAAGATTGGAACCATTTACTACCCGGCTCCATACC 8529 Query 70239 TTGCAGAAGGTC----TTCCTTATTATGAATCAGCTTATAATATTGACCAACGTAGAGTT 70294 || || || | | ||||||| ||||||||||| ||| | | |||| |||| ||| Sbjct 8530 TTTCA-AATGACACCATTCCTTACTATGAATCAGCCTATGACACTGACATGCGTAAAGTA 8588 Query 70295 ATTGATATTTATGCCGAAGCTCAGAAACATGTTGACCAA 70333 |||||| |||| || | ||||| || || ||||| ||| Sbjct 8589 ATTGATGTTTACGCTGCCGCTCAAAAGCACGTTGATCAA 8627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415872921649500