Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq1116 134 3e-26 seq1081 87.8 4e-12 seq3213 86.0 1e-11 >seq1116 Length=11413 Score = 134 bits (148), Expect = 3e-26 Identities = 260/375 (69%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 49170 GGTGCTTTCATGTTTGTTGGACCATCTGGTACTGGTAAAACTGAAATCACAAAAGCACTT 49229 ||| | ||| | || |||||| || |||| | |||||| |||||||| | ||| |||| Sbjct 6253 GGTTCATTCTTATTCGTTGGATCAACTGGAATTGGTAAGACTGAAATGGCTAAACAACTT 6312 Query 49230 GCT---GAAGCAATGGGTTCTGAGC------TAATTCGTTTTGATATGTCAGAGTTTTCG 49280 ||| ||| | | || ||||| | || || ||||| |||||||| | | || Sbjct 6313 GCTAGAGAATTATTTGGATCTGAAGATTCAATGATCCGATTTGACATGTCAGAATAT-CG 6371 Query 49281 CAAGACCACACTGTATCT-AAACTT-ATTGGTTCACCTCCTGGATATGTAGGACATGAAA 49338 | |||||| | || ||| || ||||||||||| ||||| ||||| ||| | || Sbjct 6372 TGA-ACCACAATCAGTCGCAAAGTTGATTGGTTCACCACCTGGCTATGTTGGATACGA-- 6428 Query 49339 CAGGAAATGGTCAGCTTCTTGATAAAGTT-GAACAATTCCCTAATGCAGTACTTCTACTG 49397 | | ||||||| | ||| |||||| | | ||| || || || | || || Sbjct 6429 -TGAAGCTGGTCAGTTAACTGAAAAAGTTCGTCGTAATCCTTACAGC-TTAATCTTATTG 6486 Query 49398 GATGAAATTGAAAAAGCACATCCAAAAGTACTGCTGACATTCCTACAAGTATTGGATGAA 49457 |||||| |||||||||| || || | || |||| |||||||| ||| | |||||||| Sbjct 6487 GATGAAGTTGAAAAAGCTCACCCTGATGTTCTGCACACATTCCTTCAAATCTTGGATGAT 6546 Query 49458 GGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTACTTTAATAATATTACTGTTATTATG 49517 || ||||| |||| ||||||||| ||| |||| ||| || ||| | |||| ||| Sbjct 6547 GGTCGTTTAACTGATTCACAAGGTCGAACCGTTTCCTTCAAGGATACTGTCATTATCATG 6606 Query 49518 ACTACAAACCTTGGA 49532 |||| ||| |||| Sbjct 6607 ACTAGTAACGCTGGA 6621 >seq1081 Length=8782 Score = 87.8 bits (96), Expect = 4e-12 Identities = 164/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTA-TTATTAAAGAAC 48531 ||||||||| || || ||||| |||| ||||| ||| || ||| | || | ||||| Sbjct 3329 TGCTGGTACTAAGTATCGTGGCCAATTTGAAGACCGTCTG-AAGAAAGTTCTAAAAGAGG 3271 Query 48532 TTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTG 48591 || || | | | |||||||||| | || ||||||||| | |||| | | || ||||||| Sbjct 3270 TTGAAGATAGTGGAAATGTAATTCTATTTATTGATGAATTGCATACTCTAATTGGTGCTG 3211 Query 48592 GTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTG 48651 |||||| | | ||||| | ||| || || ||||||| | ||| | || | Sbjct 3210 GTGGTA-CTG--AGGGATCAGTTGATGCCTCAAACATTTTGAAACCATCCCTTGCTCGAG 3154 Query 48652 GTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAA 48707 || | ||| || || ||||| || || ||| ||||||| || |||||||| Sbjct 3153 GTCAAGTTCAAGTAATGGGTGCTACCACACTTGATGAATATCAAAAGTACATTGAA 3098 >seq3213 Length=8410 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 178964 CCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCC 179023 ||||||| ||||||||||||| |||| ||||||||||| || |||| ||||||||| ||| Sbjct 1948 CCCTTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCC 1889 Query 179024 AGTAGGG 179030 || |||| Sbjct 1888 AGCAGGG 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108917050494500