Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5403 159 3e-34 seq5200 158 1e-33 seq5354 102 6e-17 seq1218 96.9 3e-15 >seq5403 Length=2915140 Score = 159 bits (176), Expect = 3e-34 Identities = 489/743 (66%), Gaps = 26/743 (3%) Strand=Plus/Plus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| || |||||||| ||| || || || || || ||| ||||| || || | Sbjct 121621 TGGCCTTCTTTGCTGCTTCCGATGGAATTGTAAACGAGAATCTGGTTGAGCGCTTCAGTC 121680 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | || ||||| | | || || || ||||||||||| || ||||| ||||| ||||| Sbjct 121681 AGGAGGTTCAGGTCACGGAGGCTCGCTGTTTTTATGGCTTCCAAATCGCCATGGAAAACG 121740 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG---A 44030 | || ||||| ||||||||| | || || || || ||||| | |||| ||| || Sbjct 121741 TACACTCGGAGATGTACAGTGTACTCATCGACACTTACATTAGAGATCCCCACCAGCGCG 121800 Query 44031 AGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGG 44090 || | | |||| ||||| || ||||| | || ||| | || | || || || |||| Sbjct 121801 AGTACC---TGTTCAATGCCATTGAAACGATGCCGGCGGTGAAGCGCAAGGCCGATTGGG 121857 Query 44091 CCCTTAAATGGATAAATTCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | || ||||| ||||| || |||||||| || | |||| ||||| | Sbjct 121858 CGCTGGCCTGGATCTCCTCAAAGTCTGCCAACTTTGGAGAGCGCATCATCGCTTTTGCTG 121917 Query 44148 TTGTGGAAGGCATTTTCTTTTCAG-GATCG-TTTGCGGCCATATTTTGGTTAAAGAAACG 44205 || || || || ||| ||||| | | | || || |||| || ||| | ||||| || Sbjct 121918 CCGTAGAGGGAATCTTC--TTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTGAAGAAGCG 121975 Query 44206 AGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 |||| |||||||||| |||| || || || ||| | || | || |||||| | || Sbjct 121976 AGGTCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGACGAAGGCCTTCA 122035 Query 44266 TTGCGATTTTGCT-TGCT--TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAA 44322 ||||| |||||| |||| |||| | | || || | | | ||||| | | Sbjct 122036 CTGCGACTTTGCTGTGCTAATGTT-CCAGCATCTC-----GTCCAGAAGCCACGTCGGGA 122089 Query 44323 GACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382 | || | || || | || || || | || ||||| || || | ||| || Sbjct 122090 GCGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAACAGGAGTTCCTCACAGACGC 122149 Query 44383 ATTACCTGTAAATTTAATAGGAATGAA-TG-AACTTTTGATGAACCAATATATTGAATAC 44440 || || || ||||| || || ||||| || || |||||| ||||| || |||| | Sbjct 122150 CTTGCCCGTGAATTTGATCGGCATGAACTGCGAC--TTGATGTCACAATACATCGAATTC 122207 Query 44441 ATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCG 44500 |||| || || |||| | || ||||| || ||| ||| | | || || Sbjct 122208 GTTGCGGACCGGCTACTGGTAGAGCTGGGCGTCGGGAAAATCTACAACACCAAGAATCCT 122267 Query 44501 TTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTT 44560 || |||| ||||| | || ||| |||| || || || ||||| |||||||| || Sbjct 122268 TTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGGTG 122327 Query 44561 GGAGAATATCAGCGAATGGGCGT 44583 ||||| || ||||| |||||||| Sbjct 122328 GGAGAGTACCAGCGTATGGGCGT 122350 >seq5200 Length=2197361 Score = 158 bits (174), Expect = 1e-33 Identities = 374/561 (67%), Gaps = 18/561 (3%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 ||||| | || || || || || || || | ||| || ||||| || ||||| ||| Sbjct 1469013 GGTGACTTGGGCCCGGTATACGGTTTCCAATGGCGGCACTTTGGTGCTGAATAT---ACT 1469069 Query 40926 A--TGT-ACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 | ||| || ||| || | || || || |||||| | || ||||| || ||| Sbjct 1469070 ACCTGTGACGATGACTACCGCGGCAAGGGCATCGATCAACTGAAGCAGGTTATTGACACG 1469129 Query 40983 ATTAAATCCGATCCC---GATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039 || || | |||| ||| |||||||| || ||| |||||||| || |||| Sbjct 1469130 ATCAAGAACAATCCTTCGGAT---CGACGTATCATCATGTCGGCGTGGAATCCGCTGGAC 1469186 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAA---- 41095 | | |||||||||||| || || || | || ||||||||| || | | Sbjct 1469187 ATTCCAAAGATGGCATTGCCCCCGTGCCACTGCTTGGCTCAGTTTTATGTCTCTCAGGAG 1469246 Query 41096 --TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||| ||||| || || || |||||||| || | |||||||| | || || || Sbjct 1469247 CGTGGCGAACTCTCCTGCCAGCTGTATCAACGAAGTGCCGACATGGGCTTGGGAGTGCCC 1469306 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || ||||| || || || ||| | || ||||||||||| || || || | | || Sbjct 1469307 TTCAACATTGCCTCCTACGCCCTGTTGACCTATATGATTGCTCATGTCACTGGTCTGAAG 1469366 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 |||||||| ||||||||||| | ||||| ||| ||||| | |||||| | ||||| Sbjct 1469367 CCTGGTGACTTTGTTCACACCATGGGAGACACGCATGTTTACCTAAATCACGTGGAGCCA 1469426 Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCT 41333 | || ||||| ||| | || | || || || | |||| ||||||||||| Sbjct 1469427 CTTCAGGAGCAACTCGAACGCGAGCCGCGTCCCTTCCCCAAGCTAGTTATTAAACGCCAG 1469486 Query 41334 GTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTAC 41393 || | ||||||| |||||| || ||| || |||| ||| ||||| ||||| || Sbjct 1469487 GTGCAGGACATTGAAGATTTTCGCTACGAGGACTTTGAAGTTGTGGATTATAATCCCTAT 1469546 Query 41394 CCTAAAATCCACATGGACATG 41414 || || || | ||||||||| Sbjct 1469547 CCAAAGATAAAGATGGACATG 1469567 >seq5354 Length=5555046 Score = 102 bits (112), Expect = 6e-17 Identities = 222/326 (68%), Gaps = 16/326 (5%) Strand=Plus/Plus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 |||||| |||||||| || |||||||| || ||| | ||| | || || || | || || Sbjct 5388517 TGGAGTCCATGACACAGTAGTCAATCAGCTACTGGCCAAAATCGATGGCGTGGAGCAGCT 5388576 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAA---TAGACTGGAATTAATAGACAGCGCCTT 19727 ||||||||||||||| ||||| ||||| || |||| || | || ||| || | Sbjct 5388577 GAATAATATTTTAGTGATTGGTATGACCAACCGTAGA---GACATGATCGACGAGGCGCT 5388633 Query 19728 ATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACG 19787 | || || ||||| ||||| | | || ||||||| ||| ||| ||||| ||||| Sbjct 5388634 TCTGCGTCCTGGTCGCCTGGAAGTTCAAATGGAAATTAGCTTGCCCAATGAACAGGGACG 5388693 Query 19788 TGTGGAAATTTTAAACATACATACATCAACC--ATGC--GAC-AAAATAACCTTTTAAAT 19842 ||| | || ||| ||| | ||| || | |||| ||| || || || | | Sbjct 5388694 TGTTCAGATCCTAAGCATTC--ACACGAAGCGTATGCGGGACTTTAACAAGATTGCCAGT 5388751 Query 19843 GACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTT 19902 ||| || ||| |||| || ||||| || || || | ||||| || || || Sbjct 5388752 GAC---GTCGATAACCAAGAGATCGCAGCCATAACGAAGAATTTCAGCGGAGCTGAGCTA 5388808 Query 19903 GAGGGATTAGTGAGGGCCGCCCAATC 19928 |||||||| || || || |||||||| Sbjct 5388809 GAGGGATTGGTCAGAGCGGCCCAATC 5388834 >seq1218 Length=8613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||| | || || |||||| | | | ||| ||||||||| | | || ||||| Sbjct 1877 ATGGCACTCCCTCCGTGTCATGTAATGTTTCAATTTTACGTTAACGACGGAAAACTGAGT 1936 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||||||| | || ||||| || || || ||||||||||| || ||| Sbjct 1937 TGCCAGTTGTATCAGCGGAGTGGCGACATTTTCCTTGGAGTTCCGTTTAACATCGCTAGT 1996 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228 |||||||| | || | | |||||| | | | | | || ||||| |||||| Sbjct 1997 TATGCTCTTTTGACTAACTTAATTGCAAAAGAGGTAGGTCTTGAGCCCGGTGATTTTGTT 2056 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288 || || ||||||||| || ||||||| |||||| || || | | ||| |||||| || Sbjct 2057 CATACTCTAGGAGATGCTCACATTTACAGTAATCATATTGAACAGGTAAAGGAACAATTG 2116 Query 41289 A 41289 | Sbjct 2117 A 2117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429358027500