Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5218 156 4e-33 seq5076 98.7 8e-16 seq5215 89.7 4e-13 >seq5218 Length=3038582 Score = 156 bits (172), Expect = 4e-33 Identities = 708/1105 (64%), Gaps = 32/1105 (3%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || |||||||| || |||||||| |||| || ||||| |||||||| || ||||| || Sbjct 2802893 TTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCG 2802834 Query 130466 GTTTTGAGTCCAATTTT----GTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATT 130521 ||||| || ||| ||| | || | | | |||||| || | || | || || Sbjct 2802833 GTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATG-TGAGCTTTCCATAGT--TT 2802777 Query 130522 GGGT-TGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTG 130580 || | ||| || | |||| ||| || || ||||| ||||| || || | |||| Sbjct 2802776 GGCTCTGCCACATGGATAT--TGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTG 2802719 Query 130581 CAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAA 130640 | ||||| | | | | |||| | || |||||| | || ||||| || || | | Sbjct 2802718 CGGCCATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGGA 2802659 Query 130641 TGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGC 130700 | || || || |||| ||||| | || || ||| ||| || | || Sbjct 2802658 CCTTTTGTGGAATTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCT 2802599 Query 130701 GCATACTTTTATCGT---ACAATCCAAGCT--GTACAAGATCTTTTACCAAATGATTATT 130755 ||| | ||||| |||| | |||| || ||| ||| | | |||||||| || Sbjct 2802598 TCATG---TCATCGTCCCACAAATCCAGCTCCGT-CAA-ATCCCTCAGCAAATGATGGTT 2802544 Query 130756 AATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTC 130815 | | ||| || || |||| || |||||||| ||||| || | || | || || Sbjct 2802543 GACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTC 2802484 Query 130816 AAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAA 130875 ||||||||||| || || | ||||| || || | ||| |||||||| ||||| || Sbjct 2802483 GAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAA 2802424 Query 130876 TAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAG 130935 || || || | || || || | |||| ||||| | | ||| ||||| || Sbjct 2802423 AAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAG 2802364 Query 130936 AGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT 130995 | || || | || | |||||| || | || || || || |||||| | ||||| Sbjct 2802363 ATCTGTCGGCGTT---TTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACT 2802307 Query 130996 GGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGC 131055 ||| | | ||| ||| | || || | ||||| ||| || ||||||| || Sbjct 2802306 TCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGC 2802247 Query 131056 TCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTA 131115 ||| | ||||||||||| || |||| ||||| | | || | | ||| ||||| Sbjct 2802246 TCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTA 2802187 Query 131116 AGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCT 131175 ||| | ||| | ||| | ||||| || |||||||| | || | ||| | || | Sbjct 2802186 GGGATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACG 2802127 Query 131176 ATGTTTTAAATT--ACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTATT 131233 ||| ||||||| || | | || | | ||||| |||| ||| || || ||||| Sbjct 2802126 ATGCCTTAAATTGGACTTCTTGGC-CTCCGGCAGTGGG-TAAAAGTTTATATCTATTATC 2802069 Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293 || || | || | | || | | |||||| || | || | ||| ||| | || Sbjct 2802068 TTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGT- 2802010 Query 131294 CCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTT 131353 | || | | ||||| || | | || || |||| ||| |||||||| | Sbjct 2802009 --TTTCTCTGGCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATC 2801952 Query 131354 TCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCC 131413 ||||| | |||| |||||||| | ||||| |||||||| || ||||||||| Sbjct 2801951 TCGTCGGGCGAAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCC 2801892 Query 131414 AAATTTTGTTGATTGCT-TTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCC 131472 | || ||||| ||||| ||| | | ||| ||||||| | | |||||| || |||| Sbjct 2801891 ACGTTCTGTTGGTTGCTCTTTCGGTTGCAC-GCGTCCTTGAAGAGCATGTAAGGATTGCC 2801833 Query 131473 CGTTTCGACTTGAGTTTCAATAATG 131497 || || ||||| | ||||| ||| Sbjct 2801832 AGTCTCCACTTGCGACTCAATGATG 2801808 >seq5076 Length=596799 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | |||| ||| | || || || || || || |||||||| Sbjct 35316 CCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 35257 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || ||||| | || |||||||| ||||| || || Sbjct 35256 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGG 35197 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||||||| |||| | || | ||||| | | ||||| Sbjct 35196 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACC 35137 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || |||||||| ||||||||||| Sbjct 35136 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 >seq5215 Length=2160492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||||||| Sbjct 1797509 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1797568 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||| || |||||| | || | |||||| || || || || Sbjct 1797569 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797628 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| ||| | | | || | || || | || || || Sbjct 1797629 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACC 1797688 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| || |||| |||||||||||||| ||||| Sbjct 1797689 TCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424905916116000