Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5403 105 2e-17 >seq5403 Length=2915140 Score = 105 bits (116), Expect = 2e-17 Identities = 110/143 (77%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 443716 TCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGG 443775 |||||||||||| || || ||| | || || ||||| ||||| ||||||||||||||| Sbjct 121906 TCGCTTTTGCTGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTTC-GCCTCCATCTTCTGG 121964 Query 443776 TTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGAC 443835 |||| ||||| || || |||| ||||||||||| ||||| |||||| ||||| Sbjct 121965 CTGAAGAAGCGAGGTCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGAC 122024 Query 443836 GAGGGTTTGCATTGCGACTTCGC 443858 || || | || |||||||| || Sbjct 122025 GAAGGCCTTCACTGCGACTTTGC 122047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588224071947500