Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5218 187 3e-42 seq947 122 1e-22 seq5413 107 2e-18 >seq5218 Length=3038582 Score = 187 bits (206), Expect = 3e-42 Identities = 888/1391 (64%), Gaps = 30/1391 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || |||||||| || || || ||| |||| |||||||||| ||||| || || || Sbjct 2802506 TAAATATTTGTTGTATAGGGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTCGAT 2802447 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 ||||| ||||| || |||| |||||| ||| | || || | | |||||| ||| Sbjct 2802446 GCTGTGGGCATCGGAGCCACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCC 2802387 Query 110828 TTGAGAACATCCCAGTCGTA--GTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACTGA 110884 || ||| | | |||||| | | | | | |||| | ||||||||||| |||| Sbjct 2802386 TTCAGACCTTTCCAGTCCCAAAGATCTGTCGGCGTTTTA---TCCCACATGTCGTACTGC 2802330 Query 110885 AGCAC-CCCTTGG-GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 || | ||||| ||| ||| || ||| | |||||||||| || | || | Sbjct 2802329 AGAATTCCCTTACTGACC--GGACTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGG 2802272 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| ||| || || || ||||||| | | || |||||||||||||| | || | Sbjct 2802271 CCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTA 2802212 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGA 111061 |||| || || || | | || || || || ||| | | || || ||| Sbjct 2802211 AGAGGCTGGCCTCCTCGCTTTCGTAGGGATAACG-CATAAGAATCAGCGCGTCAGCCAGA 2802153 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 111121 || ||||| || | |||||||| | || | | ||| ||||| || | | Sbjct 2802152 CCCTGAACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCTTGGCCTCCGGCAGT 2802093 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 || ||||| ||| | || || | || || ||| ||| || ||||||||| || Sbjct 2802092 GGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCC 2802033 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | ||| |||| | ||| | || ||||| | ||| || | || ||||| Sbjct 2802032 TTAAGCTTTTTGAAGTCATATGTTT---TCTCTGGCGTCACAAACATGTTGAGAGCGATC 2801976 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 ||||||||||||||||| || |||| || | |||||| | |||||| || || Sbjct 2801975 GATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAGTACTCGACAATTTCCGTGCAC 2801916 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | || | ||||| || |||| |||| |||||| ||||| ||||||||| ||| Sbjct 2801915 AGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCC 2801856 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AAC 111420 ||| |||||||||| || | || |||||| || || | | || || ||| || Sbjct 2801855 TTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATGGCGAACCACAAG 2801796 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 | | ||| |||| | ||| || ||||||||| ||||| || || || Sbjct 2801795 GACTG-TGCTTTTACAGTTCGGTTTGCGCGTCCCTCCTGTTCGTATTTCACATATAGCTT 2801737 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 ||||||||| || ||| | | || || || || |||| ||||||||||| || Sbjct 2801736 TTCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGA 2801677 Query 111541 CCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 ||| | || | || |||| || || |||||||| || ||||| |||||||||| | Sbjct 2801676 CCA--GTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATAG 2801619 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTC 111657 || | ||| | ||| |||||| | || | | || ||| || || ||||| Sbjct 2801618 AACAAATCACGGGCTCGATGCTCTTCCTTGCC-AGTATTCTTCTTAAGGTCCAGAAACTC 2801560 Query 111658 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCC 111714 | | ||||| ||||| ||||| ||||| | || | | |||| || | || Sbjct 2801559 AAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCACC 2801500 Query 111715 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATC 111774 | | |||| ||||| || || | |||||| || | ||||| |||| | ||||| Sbjct 2801499 ACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCATAGGAACCAGACCATT 2801440 Query 111775 TGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 || || || || || | ||| || || || | | | ||||| | | Sbjct 2801439 GGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTTTGCACGAATACAATGGACATTAAG 2801380 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA--GAGTTCCATAGATA 111892 |||||||| || || |||| ||||| || || | | || || || ||||| Sbjct 2801379 ACCAATACCACCTGCAGACTTGGAGATCATGGCGCATTGCTCAACTGACTT--GAAGATA 2801322 Query 111893 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 111952 || | || ||||| | ||| | || || ||| || | ||| || | | Sbjct 2801321 CCCTCAATCGAGTCGGAAGTCATGGTCAGGAGAAAACAAGACGATAGCTGGGGACGATTT 2801262 Query 111953 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCG 112012 || |||| || || ||||| | ||||| |||| || | || | | || | Sbjct 2801261 GTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGCGTGAAATAACGCTCCGAAAGCAAGTTG 2801202 Query 112013 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAAC 112072 || ||||||| | ||| ||| |||||||| || ||||| |||||||| || ||||| | | Sbjct 2801201 TACGTCTCCACGGCAGCATCGATGTCTTCTCCATGGATTCCGATTGCCACGCGCATAAGC 2801142 Query 112073 ATGTACTGTGG 112083 |||| ||| || Sbjct 2801141 ATGTGCTGGGG 2801131 >seq947 Length=14288 Score = 122 bits (134), Expect = 1e-22 Identities = 334/502 (67%), Gaps = 26/502 (5%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || || |||||||| || || || | || ||||| | |||| || || ||||| Sbjct 8089 CGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGTGGCG 8148 Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 ||||| | | | ||| |||||| ||||| ||||||||||| || | || Sbjct 8149 GCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTGG 8205 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC-ACCAGCACTGCGTTGCTTGCC 11625 || | ||| || || | ||||||||| || | || | ||| |||| || || || Sbjct 8206 TTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGACC 8264 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTT---CGCGGGCGATT 11680 || |||||||| ||||||||||||| ||| || || ||||||| | | | | Sbjct 8265 AACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACCCTG-----T 8319 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 || || | || || || | ||||| ||||| || ||||| |||||||||| | Sbjct 8320 TCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 8379 Query 11741 GCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 ||||| ||| | ||| || ||||| | |||||| || ||||| ||||| | |||| Sbjct 8380 CCAGAGA--TGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGG 8437 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856 | || || || || ||| ||| | || || ||||| ||| || || | || | Sbjct 8438 TTTTACCAGTGCCCGGCGGCCCCACAAGCAGCACGCCTTTGGGAATTTTACCGCCCAAGC 8497 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | ||| ||| | || | || ||||||||||| || || | |||||| |||| || Sbjct 8498 GCGTAAACTTCTGTGGGTCT--TTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 8555 Query 11917 CGCGTCAATCCCCTCAACATCA 11938 | |||||||| | |||||| Sbjct 8556 TTCATCAATCCCGGCTACATCA 8577 >seq5413 Length=1192065 Score = 107 bits (118), Expect = 2e-18 Identities = 183/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || || || ||| | | || ||||| || ||||| | ||||||||| || ||||||||| Sbjct 480094 TCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTTG 480035 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || || || ||||| | ||||| || ||||| || ||| ||| | || || || || Sbjct 480034 TTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGCA-GTGAGACCTCTCC 479976 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||||||||| || ||| | || || || | | | |||||| || ||||||| ||| Sbjct 479975 GTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTCG 479916 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 || ||| | | |||||| | |||| || || | ||| ||||| || ||||| Sbjct 479915 CTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATC 479856 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 | | | | || ||| ||||||| Sbjct 479855 CACAAGACTGGGAATGGAGCGCT 479833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627988822800000