Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5218 176 6e-39 seq5403 140 4e-28 seq947 89.7 6e-13 >seq5218 Length=3038582 Score = 176 bits (194), Expect = 6e-39 Identities = 969/1527 (63%), Gaps = 36/1527 (2%) Strand=Plus/Minus Query 118050 ATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAG 118106 |||||||| |||||||| || || || |||| ||| |||||| || | ||| Sbjct 2802638 ATATTTTGAATGGATCC--CCTGCTGGAT-ATGATCTGATTCTTCATGTCATCGTCCCAC 2802582 Query 118107 AGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCG 118166 | | | | || | | |||| || | ||| | ||||| || ||||| || | | Sbjct 2802581 AAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCACTTGGAACTCGCCAGAG 2802522 Query 118167 AGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAG 118226 || |||||| ||| ||||| || || || ||||| ||| | || || ||||||| Sbjct 2802521 AGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATTCGTTATTACCCATA 2802462 Query 118227 ATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTT 118286 ||||| || || || ||||||||||| || |||| | |||| ||| | | || | | Sbjct 2802461 ATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGTTTCTAACTCCATGT 2802402 Query 118287 TCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG---C 118343 | | ||| ||||| ||| | | |||||| | || | |||| | | | Sbjct 2802401 TTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAA---AGATCTGTCGGCGTTTTATCC 2802345 Query 118344 CACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGG 118403 ||||| || |||| || || || | | || ||| ||| | || ||||| | | Sbjct 2802344 CACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAAGTTTCATAGGTG 2802285 Query 118404 CCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAA 118463 || || | |||| |||| | || || || |||||| | || || |||||||| Sbjct 2802284 CCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAG 2802225 Query 118464 ATGCGA-GCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATAA 118521 || | | || | | || |||||| ||| || | | || ||| || ||| | Sbjct 2802224 ATCTGTTGGTTTAAGAGGCT-GGCCTCCTCGCTTTCGTAGG-GATAACGCATAAGAATCA 2802167 Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 | || || ||||| || || |||| |||||| || ||||| || | ||| |||||| Sbjct 2802166 GCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCT 2802107 Query 118582 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641 || | || || ||||| || |||| || | | |||| || ||| ||| || Sbjct 2802106 TGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCG 2802047 Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 118701 |||||||| || | |||||||| | | ||| | | ||||| | ||| || Sbjct 2802046 TCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTT---TCTCTGGCGTCACAAACA 2801990 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761 | || ||||| || |||| ||| || || | |||| || || |||||| | Sbjct 2801989 TGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAGTACTCGA 2801930 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 |||||||||||||| || | ||||||||||||| ||||| ||| || |||| Sbjct 2801929 CAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTC 2801870 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 118881 ||| ||||| |||||| | |||||||| || | || |||||| ||| |||| | | Sbjct 2801869 GGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGA 2801810 Query 118882 TAGCCTTCCAGACATCGGC--AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTA 118939 | || || ||| | | ||| ||||| ||| || || ||||| | ||||| Sbjct 2801809 TGGCGAACC--ACAAGGACTGTGCTTTTACAGTTCGGTTTGCGCGTCCCTCCTGTTCGTA 2801752 Query 118940 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTAT 118998 || || || ||||||||| || ||| | || ||| || || || || || | Sbjct 2801751 TTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGA-AGTCCAGG-GCATT-T 2801695 Query 118999 CTGGG--CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGG 119056 |||| ||||| || ||||| | || |||| || || ||||||||||| ||||| Sbjct 2801694 GTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGG 2801635 Query 119057 GATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 119116 ||||| || || |||| | ||| || ||| ||||| | || ||| Sbjct 2801634 TATCCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTATTCTTCTT 2801575 Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176 | |||| ||| || | | ||||| ||||| || || || || | || | | || Sbjct 2801574 AAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCC 2801515 Query 119177 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 | || | |||| |||| | ||||| | || | |||||| || | ||||| Sbjct 2801514 CGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCAT 2801455 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGAC 119293 |||| | ||||| ||| ||| || || || | ||| || || || | | Sbjct 2801454 AGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTTTGCACGAAT 2801395 Query 119294 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAG 119353 | |||| | | ||||||||| ||||| |||| ||||| ||||| | | | | Sbjct 2801394 ACAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATGGCGCATTGC-TCA- 2801337 Query 119354 ACTGCC--GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 |||| | | |||| || || |||||||| | | | | ||| || || ||| Sbjct 2801336 ACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGAAAACAAGACGAT 2801277 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | || || | ||| ||||| || || ||||| | ||||| |||| || Sbjct 2801276 AGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGCGTGAAATAACGC 2801217 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 | || | | || ||| ||||||| | | || |||||||| || || || ||||| Sbjct 2801216 TCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCATGGATTCCGATT 2801157 Query 119532 GAGACCCGCATAAACATGTATTGGGGT 119558 | || ||||||| ||||| |||||| Sbjct 2801156 GCCACGCGCATAAGCATGTGCTGGGGT 2801130 >seq5403 Length=2915140 Score = 140 bits (154), Expect = 4e-28 Identities = 261/381 (69%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||| || |||||||| ||||||||||||| ||| ||||||| Sbjct 122335 TACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCCATG 122276 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 |||| || || ||||| | ||| | ||| || || | || | || || || Sbjct 122275 AAATTGAAAGGATTCTTGGTGTTGTAGATTTTCCCGACGCCCAGCTCTACCAGTAGCCGG 122216 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 |||| ||| | || ||||| | |||||| ||| ||||||| ||||| | || || Sbjct 122215 TCCGCAACGAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCAAATT-CAC 122157 Query 129908 GGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||| | ||||| || |||| ||| |||||||||||||| || || | ||| || Sbjct 122156 GGGCAAGGCGTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATCTCGAT 122097 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTG 130026 ||| |||| | || | | | | | || ||| | | ||| ||||| || Sbjct 122096 GATGCGCTCCCGACGTGGCTTCTGGACGAGATGCTGGAACATTAGCACAGCAAAGTCGCA 122037 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| | |||||| || || || |||||| |||||| ||||| ||||| Sbjct 122036 GTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGACC 121977 Query 130087 CCGCTTCTTCAACCAGAAAAT 130107 |||||||||| |||||| || Sbjct 121976 TCGCTTCTTCAGCCAGAAGAT 121956 >seq947 Length=14288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 249/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||| || || ||||| || || || | || |||||| | ||| ||||| || Sbjct 8085 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 8144 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 || || || | | | ||| | | | ||||| |||||||||||| || | || Sbjct 8145 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 8204 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATAC-CACCCGCACTGCGTTGCTTAC 14237 || | || || ||||| |||||||| || | || | ||| |||| || || || Sbjct 8205 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 8263 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATG--GTTGA-TTTTCACGGGCAACTT 14294 | ||||| ||||||||||| ||||| | || || | | ||| |||| || | || Sbjct 8264 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 8320 Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354 | || || || ||||| | ||||| ||||| || ||||| |||||||| | || Sbjct 8321 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 8380 Query 14355 CGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 | | | || | | ||| || || || | |||||| || ||||| ||||| | ||||| Sbjct 8381 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 8439 Query 14414 TTCCCCGTCCCTGG 14427 || || || || || Sbjct 8440 TTACCAGTGCCCGG 8453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618392682580000