Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5218 158 1e-33 seq1385 122 1e-22 seq947 114 2e-20 seq5403 105 8e-18 seq5413 100 3e-16 >seq5218 Length=3038582 Score = 158 bits (174), Expect = 1e-33 Identities = 1097/1748 (63%), Gaps = 64/1748 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||||||||| ||||| || ||||| |||||||| ||| ||| | Sbjct 2801131 CCCCAGCACATGCTTATGCGCGTGGCAATCGGAATCCATGGAGAAGACATCGATGCTGCC 2801190 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||||| ||| || | | || | || |||| ||||| | ||||| || || Sbjct 2801191 GTGGAGACGTACAACTTGCTTTCGGAGCGTTATTTCACGCACGCTTCGCCAACGCTATTT 2801250 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 |||| ||| | ||||| | || ||| || || | ||| | ||| Sbjct 2801251 GCCGCTGCCACAAATCGTCCCCAGCTATCGTCTTGTTTTCTCCTGACCATGACTTCCGAC 2801310 Query 104402 TCAATCAACGGTATCTATGGAACTC--TTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | ||||||| || || || | | || || ||||| |||| || | Sbjct 2801311 TCGATTGAGGGTATCTTC--AAGTCAGTTGAGCAATGCGCCATGATCTCCAAGTCTGCAG 2801368 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| | | ||||| | | | || || || ||| | || || | Sbjct 2801369 GTGGTATTGGTCTTAATGTCCATTGTATTCGTGCAAAGGGTACTTCCATTTGCGGAACCA 2801428 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || ||||| | |||| ||||| | || |||||| | || || |||| Sbjct 2801429 ACGGCACTTCCAATGGTCTGGTTCCTATGCTGAGAGTCTTTAACAACGTGGCACGATATG 2801488 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | |||| | ||| | || |||| | | || | ||||| ||||| ||||| Sbjct 2801489 TGGATCAGGGTGGTGGCAAGCGGCCGGGAGCCTTTGCCATTTATCTAGAGCCCTGGCATT 2801548 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG-- 104694 ||||| | | ||||| || || | | || | || | |||| | || | Sbjct 2801549 CGGATGTTTTTGAGTTTCTGGACCT---TAAGAAGAATACTGGCAAGGAAGAGCATCGAG 2801605 Query 104695 -CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| ||| | |||| || || ||||| ||||||||||||||||| |||| |||| | Sbjct 2801606 CCCGTGATTTGTTCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGGCCA 2801665 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 || | ||||| || || ||||| |||| ||||| || |||| ||| | Sbjct 2801666 ATGAGGACTGGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGGGGCG 2801725 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | ||||||||| || || || ||||| | || || || || | || || Sbjct 2801726 ATGAGTTTGAAAAGCTATATGTGAAATACGAACAGGAGGGACGCGCAAACCGAACTGTAA 2801785 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| ||||| || || | |||| ||| |||||||| | || |||| Sbjct 2801786 AAGCACAGTCCTTGTGGTTCGCCATCATTGAGTCGCAAGTGGAGACTGGCAATCCTTACA 2801845 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| | ||| ||||| || |||| |||||| || ||| |||| |||| || || Sbjct 2801846 TGCTCTTCAAGGACGCGTGCAACCGAAAGAGCAACCAACAGAACGTGGGCACCATTAAAT 2801905 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | ||||| || || ||||| | || | | || |||| || || || | Sbjct 2801906 GCAGTAATCTGTGCACGGAAATTGTCGAGTACTCTTCGCCCGACGAGATTGCAGTTTGCA 2801965 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 105113 | | ||||| ||||||||| || || |||| ||||||| || ||| ||| | Sbjct 2801966 ATTTGGCATCGATCGCTCTCAACATGTTTGTGACGCCAGAGAAAA---CATATGACTTCA 2802022 Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 |||| || | || || || || || || ||| |||||| || | | || |||| || Sbjct 2802023 AAAAGCTTAAGGAGGTCACAAAGACGGTGGCCAGAAACCTCAATAAGATAATAGATATAA 2802082 Query 105174 ATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233 | |||||||| | | || || || ||| | || || ||||| ||||| ||| Sbjct 2802083 ACTTTTACCCACTGCCGGAGGCCAAGAAGTCCAATTTAAGGCATCGTCCTATTGGCATCG 2802142 Query 105234 GTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA- 105292 | ||||||||||| || || | | |||||| | || || || || ||||| Sbjct 2802143 GCGTTCAGGGTCTGGCTGACGCGCTGATTCTT-------ATGCGTT--ATCCCTACGAAA 2802193 Query 105293 GCGA--AGG----------AAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 |||| ||| ||| ||| | || ||||| ||||| || | || Sbjct 2802194 GCGAGGAGGCCAGCCTCTTAAACCAA----CAGATCTTTGAAACCATTTACTTTGGAGCC 2802249 Query 105341 CTTGAGGCGAGTTCAGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 || || || |||| || |||| | ||| || || | |||||||| | ||| || Sbjct 2802250 CTGGAAGCCAGTTGCGAACTGGCCCAAAGG--GACGGCACCTATGAAACTTATGAAGGAA 2802307 Query 105399 CTCCAGCTTCACAAGGGG--TGCTTCAATTTGATATGTGGGA---AGGTGAGACCAAGCT 105453 ||| | ||| | ||| | || || | || |||||||| | ||| | || Sbjct 2802308 GTCCGG--TCAGTAAGGGAATTCTGCAGTACGACATGTGGGATAAAACGCCGACAGATCT 2802365 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 | | |||||| ||| ||| ||||| |||||| | | || || | ||| || Sbjct 2802366 T---TGGGACTGGAAAGGTCTGAAGGAGTCCATCAAAAAACATGGAGTTAGAAACTCCCT 2802422 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 | ||||||| ||||| ||||| || || || ||||| |||||||||| |||| ||| Sbjct 2802423 TTTGGTGGCTCCGATGCCCACAGCATCGACTGCTCAAATTATGGGTAATAACGAATCCTT 2802482 Query 105574 TGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGT 105633 || ||||| || || || || ||| ||| | ||| | || ||||| | || Sbjct 2802483 CGAGCCCTATACAACAAATATTTATACAAGACGCGTACTCTCTGGCGAGTTCCAAGTGGT 2802542 Query 105634 CAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 105693 |||| | ||| | || || | | ||| | | | | ||| | | || |||||| | Sbjct 2802543 CAACCATCATTTGCTGAGGGATTTGACGGAGCTGGATTTGTGGGACGATGACATGAAGAA 2802602 Query 105694 TCTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTA 105752 || || | ||| || || |||||||||||||||| |||||| | | | Sbjct 2802603 TCAGATCATATCCAGCAGG-GGATCCATTCAAAATATTGAATCAATTCCACAAAAGGTCC 2802661 Query 105753 -AGAAGTTGTACCGCACAGTTTGGGAAATCA-AGATGAAGGATGTCATTGACATGGCCGC 105810 ||| || ||| ||||||||||||||| || | || | ||| | |||||||| Sbjct 2802662 GAGACCTT-TACAAAACAGTTTGGGAAATCTCAGTTAAATCAACA-ATTAAAATGGCCGC 2802719 Query 105811 AGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGG-AAAGTCCAA 105869 |||||| ||| || || ||||| || || | ||| || ||| | || | || Sbjct 2802720 AGATCGCGGTGCGTTTATAGATCAGAGCCAGTCCTTCAATATCCATGTGGCAGAGCCAAA 2802779 Query 105870 CGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGA 105929 | ||| |||||| | || || || | ||| ||||| ||||| ||||| || | Sbjct 2802780 CTATG-GAAAGCTCACATCCATACATTTCTACTCCTGGAAAGCTGGTCTTAAAACCGGAA 2802838 Query 105930 TGTATTAC 105937 |||| ||| Sbjct 2802839 TGTACTAC 2802846 >seq1385 Length=14403 Score = 122 bits (134), Expect = 1e-22 Identities = 277/411 (67%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 9484 CTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACG 9543 ||| || || |||||| ||| || | ||| || ||||| ||||| ||||||||||| Sbjct 4751 CTCTCGACCACGAACATCTGGTTGACCAACTAAAATTTTACGGTCAAATCGACCTGGACG 4810 Query 9544 AAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT 9603 | | || |||||| | |||| || || || ||||| ||||||| | ||| Sbjct 4811 AGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCAATGACAATGACACC--- 4867 Query 9604 TTCATTATC---AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9660 |||||| | |||||||||||| || || ||||| |||| |||||||| ||||| Sbjct 4868 TTCATTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAGGGTTTGTTCACGTTC 4927 Query 9661 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9718 ||| | | || ||| || | | |||| ||| ||||||||||| |||||| Sbjct 4928 ATCGT--GACCGCCGCCCATTCCGGATCCACGTTTTCGTCCAACGGCATCAATTTCATCA 4985 Query 9719 ATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG 9778 || |||| ||| |||| ||||| || |||| | ||| | || || | Sbjct 4986 ATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAATAAATCTCTAACCCGGCTA 5045 Query 9779 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGAC 9837 || || ||||| |||||||| || || || | || | | | | || || ||| || || Sbjct 5046 GCACCAACACCCACAAACATTTCAACGAAATCTGATCCAG-ATAATGAATAGAATGGAAC 5104 Query 9838 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| | |||||| |||| ||| || || | |||||||| ||||| || Sbjct 5105 ATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTACCGGTACCAGG 5155 >seq947 Length=14288 Score = 114 bits (126), Expect = 2e-20 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| || | ||||| | || || || || |||||||| || Sbjct 8176 TCAAAACCATCCATCTCAACCAGCATCTGGTTCAGTGTCTGCTCGCGCTCATCATT-GCC 8234 Query 9671 GGCATACC-ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 | || | ||| |||| || || || ||||||||||| ||||||||||||| || Sbjct 8235 GCCACCCATACCTGCACCACGATGGCGACCAACGGCATCAATTTCATCAATGAAGATAAT 8294 Query 9730 GCATG--GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||| | | ||||||| | | ||| || | || || ||||| || || ||| Sbjct 8295 GCAAGGAGCTGATTTT--TTACCCTGTTCGAACATGTCACGCACACGGGATGCACCAACA 8352 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || || ||||| |||||||||| | | | | || | | ||| || ||||| | ||| Sbjct 8353 CCTACGAACATTTCCACAAAGTCGGAACCAG-AGATGGTAAAGAACGGTACATTGGCTTC 8411 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| |||||||| ||||| | || || ||||| || || ||| ||| | || || | Sbjct 8412 ACCTGCAATGGCGCGGGCCAACAGGGTTTTACCAGTGCCCGGCGGCCCCACAAGCAGCAC 8471 Query 9907 ACCTCGTGGAATCTTGGCGCC--ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||||| || |||| | | || | ||| || | || ||||||||| Sbjct 8472 GCCTTTGGGAATTTTACCGCCCAAGCGCGTAA--ACTTCTGTGGGTCTTTCAGAAAATCC 8529 Query 9965 ACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || ||||| | | ||| |||| || | |||||||| | ||||| Sbjct 8530 ACGATTTCCTGAAGTTCCCCTTTAGCTTCATCAATCCCGGCTACATC 8576 >seq5403 Length=2915140 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||||| ||||| || |||| ||||| || ||||| ||||||||| ||| ||| Sbjct 121889 CTTTGGAGAGCGCATCATCGCTTTTGCTGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTT 121948 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | | || | ||||| |||||||||||||| ||||| ||||| |||||||||||| Sbjct 121949 CGCCTCCATCTTCTGGCTGAAGAAGCGAGGTCTGATGCCTGGTCTGACCTTCTCCAACGA 122008 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||| ||||| | ||||| || || ||| || ||||| ||| Sbjct 122009 GCTGATCTCCAGGGACGAAGGCCTTCACTGCGACTTTGCTGTG 122051 >seq5413 Length=1192065 Score = 100 bits (110), Expect = 3e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 |||||| || ||| | | || ||||| |||||||| | |||||||| ||||| || || Sbjct 480095 ATCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTT 480036 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 168575 ||| || |||| |||| | ||||| || || || || || || || ||||| || | Sbjct 480035 GTTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGC-AGTGAGACCTCTC 479977 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 |||||||||| || | |||| || || | | | |||||| || || |||| || Sbjct 479976 CGTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTC 479917 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 ||| || | | |||||| | | |||| |||||||| || ||||| || |||| Sbjct 479916 GCTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCAT 479857 Query 168696 CC 168697 || Sbjct 479856 CC 479855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583220700820000