Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1253 178 4e-39 seq5218 172 2e-37 seq3849 105 2e-17 seq5215 104 7e-17 seq1023 104 7e-17 seq5216 89.7 2e-12 >seq1253 Length=3799 Score = 178 bits (196), Expect = 4e-39 Identities = 231/316 (73%), Gaps = 5/316 (2%) Strand=Plus/Plus Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 |||||||| || | || || || || | | | || ||||||||||| || || || || Sbjct 3343 TGCTGAAGATTACATTGGCGACACTGTTAGTCAAGCAGTTATTACTGTTCCTGCTTACTT 3402 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 ||||||||| || ||| || || |||||||| || | ||||| || | ||||| Sbjct 3403 TAATGATGCTCAACGTCAAGCTACCAAAGATGCCGGTAAAATTGCCGGACTTGATGTTAA 3462 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755 |||||| ||||||||||| ||||| || || |||||||||| | |||||| | || Sbjct 3463 AAGAATTATTAATGAACCTACTGCAGCTTCACTTGCATATGGTTTAGATAAA---AAAGA 3519 Query 349756 CCAAGaaaaaaaTATTCTTA-TTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 | |||| |||| | ||||| ||| |||||||||||| |||||||||||||| || | | Sbjct 3520 CAAAGATGAAAA-AATCTTAGTTTATGATTTAGGTGGAGGTACTTTTGATGTTTCTGTCC 3578 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 | | | | || ||| | || ||||| ||||| ||||||||| || | |||| Sbjct 3579 TTGAATTAGGGGATGGAGTCTTCCAAGTTCTTTCAACTAATGGTGATACCCACTTAGGTG 3638 Query 349875 GAGAAGATTTTGATAA 349890 |||| ||||| ||||| Sbjct 3639 GAGATGATTTCGATAA 3654 >seq5218 Length=3038582 Score = 172 bits (190), Expect = 2e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || | |||||||| || ||||| ||||| ||||| Sbjct 2718270 ACCACCACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGA 2718329 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || ||||| ||||| ||||| |||||||| ||||| Sbjct 2718330 GAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 2718389 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||||||| |||||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 2718390 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 2718449 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 2718450 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq3849 Length=13819 Score = 105 bits (116), Expect = 2e-17 Identities = 239/358 (67%), Gaps = 5/358 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || | |||||| | | || |||||||||| ||||| || ||| | Sbjct 5421 CCCGAGGAGATCTCCGCCATGGTTCTGGGCAAGATGAAGGAAACCGCTGAGGCCTATCTG 5480 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | ||||| | ||||| || || || || || |||||||||||| Sbjct 5481 GGCAAGAAGGTCACCCACGCTGTCGTCACTGTTCCGGCTTACTTCAACGATGCCCAGCGT 5540 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || |||||||| ||||| || | | || || | || ||||| || Sbjct 5541 CAGGCTACCAAGGATGCTGGTGTGATTGCCGGTCTCCAGGTGCTCCGTATCATTAACGAG 5600 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770 ||||| ||||| || ||||| || || || || || || ||| | || || ||| | Sbjct 5601 CCCACAGCTGCTGCCATTGCTTACGGTCTGGACAAGAAGGAGGG----CGAGAAGAATGT 5656 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 || | || ||||| || || || || || ||||| || || || || |||| | || Sbjct 5657 GCTGGTGTTCGATTTGGGCGGCGGCACCTTCGATGTCTCCCTGCTGACCATTGACAACGG 5716 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 | || || || || || ||||| || ||| | ||||| || || || ||| Sbjct 5717 TGTGTTCGAGGTGGTGGCCACCAACGGTGACACCCATTTGGGTGGTGAGGACTTCGAT 5774 >seq5215 Length=2160492 Score = 104 bits (114), Expect = 7e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || || || || || || Sbjct 1797277 CATACCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 1797336 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || ||||| || ||||| | ||| ||||| || || Sbjct 1797337 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGG 1797396 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || ||||| | || || || || Sbjct 1797397 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTC 1797456 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || | || || || || ||||||||| Sbjct 1797457 GACCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATT 1797508 >seq1023 Length=32529 Score = 104 bits (114), Expect = 7e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||||| |||||| | ||||| ||||||| ||| || | |||||||| || Sbjct 13360 AAGATGAAGGAAACGGCTGAATCCTATTTGGGTGAAAAAGTTTCTCAGGCTGTTATCACG 13419 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || ||||| |||||||||||| || || || ||||| || | ||||| Sbjct 13420 GTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCCACCAAGGATGCAGGTAAGATTGCT 13479 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || || | || || || |||||||| || || || | || || ||||| Sbjct 13480 GGCCTTGAAGTACTGCGTATCATCAACGAACCCACAGCGGCTGCTCTGGCTTACGGGCTG 13539 Query 349742 GATAA 349746 || || Sbjct 13540 GAAAA 13544 >seq5216 Length=775386 Score = 89.7 bits (98), Expect = 2e-12 Identities = 218/326 (67%), Gaps = 12/326 (4%) Strand=Plus/Plus Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||||| ||||| || ||| | || | | || || ||||||| | |||||| Sbjct 454398 ATGAAGGAAACCGCTGAGGCCTATCTGGGCAAGAAGGTCACCCATGCTGTCGTGACTGTA 454457 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || || || || ||||||||||||||| || || || |||||||| ||||| || Sbjct 454458 CCGGCTTACTTCAATGATGCCCAGCGTCAGGCTACCAAGGATGCTGGTGTGATTGCCGGT 454517 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | | || || | || || || || ||||| ||||| || ||||| || || || | Sbjct 454518 CTCCAGGTGCTCCGTATCATCAACGAGCCCACAGCTGCTGCCATTGCTTACGGTCTGAAC 454577 Query 349745 AA-AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGA 349803 || || ||| | || || ||| | || | || ||||| | || || || || Sbjct 454578 AAGAAGGAGGG----CGAGAAGAATGTGCTGGTCTTCGATTT-----GCGGCACCTTCGA 454628 Query 349804 TGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 ||| || || || |||| |||| | || | ||||| || || || ||||| | Sbjct 454629 TGTCTCCCTGCTGAACA-TTGACAACGGTGTGTTTGAGGTGGTGGCCACCAACGGTGACA 454687 Query 349863 CACATCTTGGTGGAGAAGATTTTGAT 349888 | ||| | ||||| || || || ||| Sbjct 454688 CCCATTTGGGTGGTGAGGACTTCGAT 454713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515147621916500