Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq5200 105 5e-18 >seq5200 Length=2197361 Score = 105 bits (116), Expect = 5e-18 Identities = 251/372 (67%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 111574 TCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCAAAGTCATCAGCAAC-AAA 111632 ||||||||||| |||| || |||||| | | | ||||||||| || | | | ||| Sbjct 1469563 TCCATCTTTATCTTTGGATAGGGATTATAATCCACAACTTCAAAGTCCTC-GTAGCGAAA 1469505 Query 111633 ATCGTCAATG-CAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTC 111691 ||| |||||| | ||| || |||||||| ||| || || ||||| |||| | Sbjct 1469504 ATCTTCAATGTCCTGCACCT-GGCGTTTAATAACTAGCTTGGGGAAGGGACGCGGCTCGC 1469446 Query 111692 GGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATAC 111751 | || || || | |||| | |||||||| |||||||||| ||||| || Sbjct 1469445 GTTCGAGTTGCTCCTGAAGTGGCTCCACGTGATTTAGGTAAACATGCGTGTCTCCCATGG 1469386 Query 111752 AATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGAC 111811 || | || || | ||||| || |||||||| || |||||||| || || | || Sbjct 1469385 TGTGAACAAAGTCACCAGGCTTCAGACCAGTGACATGAGCAATCATATAGGTCAACAGGG 1469326 Query 111812 TGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCT 111871 ||| |||||||| || ||||| || | |||||| || | || |||||| |||| Sbjct 1469325 CGTAGGAGGCAATGTTGAAGGGCACTCCCAAGCCCATGTCGGCACTTCGTTGATACAGCT 1469266 Query 111872 GACATGATAGTT------TATTTTGTGACACATAAAATTGA-CAAAGTACATGACAAGGA 111924 | || || |||| | || || |||||||| ||| | ||| | || || || Sbjct 1469265 GGCAGGAGAGTTCGCCACGCTCCTGAGAGACATAAAACTGAGCCAAGCA-GTGGCACGGG 1469207 Query 111925 GGCAATGCCATC 111936 |||||||||||| Sbjct 1469206 GGCAATGCCATC 1469195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391919327396500