Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5218 111 2e-19 seq5403 98.7 1e-15 >seq5218 Length=3038582 Score = 111 bits (122), Expect = 2e-19 Identities = 553/874 (63%), Gaps = 34/874 (4%) Strand=Plus/Minus Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 |||||||| ||||| || || ||||||| || ||| ||||| ||||| ||||| Sbjct 2801976 CGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAGTACTCGACAATTTCCGTGCA 2801917 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 || |||| | || |||||||| | ||||| ||||||||||| ||| || ||||| Sbjct 2801916 CAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTC 2801857 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235 |||| || |||||| || | || ||||| || || || | | | || ||| | Sbjct 2801856 CTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATGGCGAACCACAA 2801797 Query 79236 GTCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAAC 79293 | | | || ||| ||| || || |||| |||| || || | | Sbjct 2801796 GGACTGTGCTTTTACA--GTTCGGTTTGCGCGTCCCTCCTGTTCGTATTTCACATATAGC 2801739 Query 79294 TCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGG 79353 | | || | || || | ||||| | || || ||||| | ||| || || | || Sbjct 2801738 TTTTCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGC 2801679 Query 79354 TGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTG 79413 ||||||||| | ||| || | ||||||||| || || ||||||||||| | Sbjct 2801678 GACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATAG 2801619 Query 79414 AAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCC 79473 || | || ||| || ||| || | ||| ||| || || ||||| || Sbjct 2801618 AACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTATTCTTCTTAAGGTCCAGAAACTCA 2801559 Query 79474 ATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCG 79533 | | || | ||||| ||||| ||||| ||||| || | ||| |||||||| || Sbjct 2801558 AAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCACCA 2801499 Query 79534 CCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCG 79593 ||||| | || || || ||| |||||| || |||| ||||| || || | || | | Sbjct 2801498 CCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCATAGGAACCAGACCATTG 2801439 Query 79594 GCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG--A 79651 | |||||| || ||| || ||||| | || ||||| || ||| | Sbjct 2801438 GAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTTTGCACGAAT------ACAATGGACA 2801385 Query 79652 TT----CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAG 79707 || || || || || | |||||||||| ||||| | || | | || | || Sbjct 2801384 TTAAGACCAATACCACCTGCAGACTTGGAGATCATGGCGCATTGCTCAACTGACTTGAAG 2801325 Query 79708 ATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTG 79767 || ||||| ||||||||| |||| | | || || || ||| | ||| || Sbjct 2801324 ATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGAAAACAAGACGATAGCTGGGGACGA 2801265 Query 79768 TTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG-AAGAACTTTTGGCTC----A 79822 || || | ||| || || || |||| ||||||||| || ||| |||| | Sbjct 2801264 TTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGCGTGAAATAAC-----GCTCCGAAA 2801210 Query 79823 TCAGATCGTACGTCTCCTTGACGCGCGG----GAGGTCGTCGCCGTGGATGCCGACCGCG 79878 || | |||||||||| ||| || | || ||| || || ||||| |||| || Sbjct 2801209 GCAAGTTGTACGTCTCC---ACG-GCAGCATCGATGTCTTCTCCATGGATTCCGATTGCC 2801154 Query 79879 ACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGA 79912 |||||||| | | || |||||| |||| ||| Sbjct 2801153 ACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGA 2801120 >seq5403 Length=2915140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 |||| | | || |||| |||||||| ||| || |||||||||||| || ||| Sbjct 121890 TTTGGAGAGCGCATCATCGCTTTTGCTGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTTC 121949 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | || |||||||| || ||||| || || ||||| || |||| |||||||||||| Sbjct 121950 GCCTCCATCTTCTGGCTGAAGAAGCGAGGTCTGATGCCTGGTCTGACCTTCTCCAACGAG 122009 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||| ||| ||||||| ||||| || || ||||| ||| Sbjct 122010 CTGATCTCCAGGGACGAAGGCCTTCACTGCGACTTTGCTGTG 122051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548487088920000