Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5413 161 1e-34 seq5218 145 8e-30 >seq5413 Length=1192065 Score = 161 bits (178), Expect = 1e-34 Identities = 290/421 (69%), Gaps = 2/421 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| || |||||||| ||||| || | ||||| ||| || | | ||||| || || Sbjct 480274 CCAGTGCCTATACCCTCGGCACCGTTTACCAGAACCATGGGAATAATAGGAAGATACCAC 480215 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| | || | | ||||| || || ||||| ||||| || || ||| ||| Sbjct 480214 AACGGCTCAATCTTCTGCCCGTCATCGGTTTGGTACTGGAGCAGCGGATCATCAAGGGGA 480155 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | || |||| || | | | |||||||||||||||| || || | Sbjct 480154 TGGTAAATCAATCTGGTTAGTGGGGACATCAGGGTGAAAATGTAACGAGCACTAGCGCAA 480095 Query 117332 TCCTTGCCACCAG-CAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 |||||||| || | |||| || |||||||| || || | ||||| | || || | ||| Sbjct 480094 TCCTTGCCTCCCGTCAAG-CGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTT 480036 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||||| ||||||| ||||||| ||||| || || || || || || |||| || Sbjct 480035 GTTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGCAGTGAGACCTCTCC 479976 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||||| || |||| | ||| ||||| | || | || ||| || ||||||| ||| Sbjct 479975 GTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTCG 479916 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | ||| |||||| ||||| | || ||||||||||| | |||||||| ||||| Sbjct 479915 CTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATC 479856 Query 117571 C 117571 | Sbjct 479855 C 479855 Score = 122 bits (134), Expect = 1e-22 Identities = 280/422 (66%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || ||||| |||||||| ||||||| ||| || | |||||| || || Sbjct 480274 CCAGTGCCTATACCCTCGGCACCGTTTACCAGAACCATGGGAATAATAGGAAGATACCAC 480215 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||||| | || || |||||||| | ||| | | | | || ||| ||| Sbjct 480214 AACGGCTCAATCTTCTGCCCGTCATCGGTTTGGTACTGGAGCAGCGGATCATCAAGGGGA 480155 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | | | ||| || || | || || | ||||| ||||| || | || || | Sbjct 480154 TGGTAAATCAATCTGGTTAGTGGGGACATCAGGGTGAAAATGTAACGAGCACTAGCGCAA 480095 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || | || || || || ||||| || ||||| || || || | |||| Sbjct 480094 TCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTTG 480035 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 |||| |||||| | || || ||||||||||| || || |||||| | || ||| Sbjct 480034 TTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGCAGTGAGACCTCTCCG 479975 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||| || |||| | ||| || | | || | |||||| || ||||||| || | Sbjct 479974 TGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTCGC 479915 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 | ||| |||||| |||| | | || |||||||||||| || |||| || ||| Sbjct 479914 TTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATCC 479855 Query 152296 AC 152297 || Sbjct 479854 AC 479853 >seq5218 Length=3038582 Score = 145 bits (160), Expect = 8e-30 Identities = 501/769 (65%), Gaps = 18/769 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTG-AGACGTACG 53252 |||||||| || | || ||||| || || ||| | | || || ||||| |||||||| Sbjct 2801146 ATGCGCGTGGCAATCGGAATCCATGGAGAAGACATCGATGC-TG-CCGTGGAGACGTACA 2801203 Query 53253 ACTTAAT----GAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 |||| | |||| || || |||||||| ||||||| || || ||||| Sbjct 2801204 ACTTGCTTTCGGAGCGT----TATTTCACGCACGCTTCGCCAACGCTATTTGCCGCTGCC 2801259 Query 53309 ACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGAC 53368 || |||| || ||| | ||| || || || || | |||| |||||||| || Sbjct 2801260 ACAAATCGTCCCCAGCTATCGTCTTGTTTTCTCCTGACCATGACTTCCGACTCGATTGAG 2801319 Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428 || |||| | || | | || | || ||| |||||||||| | |||||||| ||| Sbjct 2801320 GGTATCTTCAAGTCAGTTGAGCAATGCGCCATGATCTCCAAGTCTGCAGGTGGTATTGGT 2801379 Query 53429 ATCCACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | | || || | || ||||| || || || | || || || |||||| Sbjct 2801380 CTTAA-TG-TCCATTGTATTCGTGCAAAGGGTACTTCCATTTGCGGAACCAACGGCACTT 2801437 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || |||| | || |||||||| | ||||| |||||| ||| || || || | |||| Sbjct 2801438 CCAATGGTCTGGTTCCTATGCTGAGAGTCTTTAACAACGTGGCACGATATGTGGATCAGG 2801497 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 ||||||| ||||| ||| | || ||||| || || ||||| ||||| | || || Sbjct 2801498 GTGGTGGCAAGCGGCCGGGAGCCTTTGCCATTTATCTAGAGCCCTGGCATTCGGATGTTT 2801557 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGT 53666 | |||||||| || || |||| || | |||||| || |||||| ||| Sbjct 2801558 TTGAGTTTCTGGACCTTAAGAAGAATACTGGCAAGGAAGAGCATCGAGCCCGTGATTTGT 2801617 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 | || |||||||| || || ||||||||| || |||||| | ||||| |||| Sbjct 2801618 TCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGGCCAATGAGGACTGGT 2801677 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || | || || || | ||||| || || || | ||| | || || |||||| | Sbjct 2801678 CGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGGGGCGATGAGTTTGAAA 2801737 Query 53787 AGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA-GGTCAAGGCGCGTGAG 53845 || | ||| || |||| | |||| ||| ||| ||| || || || | Sbjct 2801738 AGCTATATGTGAAATACGAACAGGAGGGACGC-GCAAACCGAACTGTAAAAGCACAGTCC 2801796 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| || ||| | || || |||||||| || | || |||||| || |||| Sbjct 2801797 TTGTGGTTCGCCATCATTGAGTCGCAAGTGGAGACTGGCAATCCTTACATGCTCTTCAAG 2801856 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAAT 53954 || || |||| ||||||||||| ||||| | ||| ||| |||| Sbjct 2801857 GACGCGTGCAACCGAAAGAGCAACCAACAGAACGTGGGCACCATTAAAT 2801905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547178378900000